Evidence map›Paper›PMID 39245668›Full record

ArticleNature communications2024

Structures of the human leading strand Polε-PCNA holoenzyme.

Qing He, Feng Wang, Nina Y Yao, Michael E O'Donnell, Huilin Li

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Targeting RAD52 overcomes PARP inhibitor resistance in preclinicalbioRxiv : the preprint server for biology · 2025
    Article
  9. The proofreading mechanism of the human leading-strand DNA polymerase ε holoenzyme.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
  11. Article
  12. Clamping Pol ε to the leading strand.Nature structural & molecular biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Qing He *Department of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.ORCID 0000-0002-8414-2430
Feng Wang *Department of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.ORCID 0000-0002-6565-8095
Nina Y YaoDNA Replication Laboratory and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Michael E O'DonnellDNA Replication Laboratory and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA. odonnel@rockefeller.edu.ORCID 0000-0001-9002-4214
Huilin LiDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA. Huilin.Li@vai.org.ORCID 0000-0001-8085-8928

Funding

Structural mechanism of DNA replicationR35GM131754 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2019 to 2026
$6.0M
Biochemistry of Eukaryotic Replication Fork and DNA RepairR35GM148159 · NIGMS · ROCKEFELLER UNIVERSITY · PI MICHAEL E O'DONNELL · 2023 to 2026
$1.7M
NIGMS NIH HHS R35 GM131754NIGMS NIH HHS R35 GM148159U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM131754
6 · The paper itself

Abstract

In eukaryotes, the leading strand DNA is synthesized by Polε and the lagging strand by Polδ. These replicative polymerases have higher processivity when paired with the DNA clamp PCNA. While the structure of the yeast Polε catalytic domain has been determined, how Polε interacts with PCNA is unknown in any eukaryote, human or yeast. Here we report two cryo-EM structures of human Polε-PCNA-DNA complex, one in an incoming nucleotide bound state and the other in a nucleotide exchange state. The structures reveal an unexpected three-point interface between the Polε catalytic domain and PCNA, with the conserved PIP (PCNA interacting peptide)-motif, the unique P-domain, and the thumb domain each interacting with a different protomer of the PCNA trimer. We propose that the multi-point interface prevents other PIP-containing factors from recruiting to PCNA while PCNA functions with Polε. Comparison of the two states reveals that the finger domain pivots around the [4Fe-4S] cluster-containing tip of the P-domain to regulate nucleotide exchange and incoming nucleotide binding.

Indexed as

Cryoelectron MicroscopyProliferating Cell Nuclear AntigenCatalytic DomainDNADNA Polymerase IIDNA ReplicationHoloenzymesHumansModels, MolecularPoly-ADP-Ribose Binding ProteinsProtein BindingDNADNA Polymerase IIHoloenzymesPCNA protein, humanPOLE protein, humanPoly-ADP-Ribose Binding ProteinsProliferating Cell Nuclear Antigen

Identifiers

PMID39245668
PMCPMC11381554

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.