Evidence map›Paper›PMID 39244569›Full record

ArticleNature communications2024

Molecular epidemiology and evolutionary characteristics of dengue virus 2 in East Africa.

Sindiso Nyathi, Izabela M Rezende, Katharine S Walter, Panpim Thongsripong, Francis Mutuku, Bryson Ndenga, Joel O Mbakaya, Peter Aswani, Peter S Musunzaji, Philip K Chebii and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  11. Article
  12. Review
  13. Temporal Variation and Human Host Predominance inPathogens (Basel, Switzerland) · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Sindiso NyathiDepartment of Epidemiology and Population Health, Stanford University School of Medicine, Stanford, CA, 94305, USA. sindiso.nyathi@yale.edu.
Izabela M RezendeDivision of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Katharine S WalterDivision of Epidemiology, Department of Internal Medicine, University of Utah School of Medicine, University of Utah, Salt Lake City, UT, 84132, USA.
Panpim ThongsripongFlorida Medical Entomology Laboratory, University of Florida, Vero Beach, FL, 32962, USA.
Francis MutukuDepartment of Environment and Health Sciences, Technical University of Mombasa, Mombasa, Kenya.ORCID 0000-0002-9000-7008
Bryson NdengaCentre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya.ORCID 0000-0002-8445-2885
Joel O MbakayaCentre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya.
Peter AswaniCentre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya.
Peter S MusunzajiVector-borne Disease Unit, Msambweni Hospital, Msambweni, Kenya.
Philip K ChebiiVector-borne Disease Unit, Msambweni Hospital, Msambweni, Kenya.
Priscilla W MainaVector-borne Disease Unit, Msambweni Hospital, Msambweni, Kenya.
Paul S MutukuVector-borne Disease Unit, Msambweni Hospital, Msambweni, Kenya.
Charles M Ng'ang'aVector-borne Disease Unit, Msambweni Hospital, Msambweni, Kenya.
Said L MalumboVector-borne Disease Unit, Msambweni Hospital, Msambweni, Kenya.
Zainab JembeDiani Health Center, Ukunda, Kenya.
David M VuDepartment of Pediatrics, Division of Infectious Diseases, Stanford University School of Medicine, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0002-0930-4524
Erin A MordecaiDepartment of Biology, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0002-4402-5547
Shannon BennettDepartment of Microbiology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA, 94118, USA.ORCID 0000-0003-1887-9642
Jason R AndrewsDivision of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0000-0002-5967-251X
A Desiree LaBeaudDepartment of Pediatrics, Division of Infectious Diseases, Stanford University School of Medicine, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0001-8364-6867

Funding

The child health impacts of overlapping vector-borne diseases in KenyaR01AI102918 · NIAID · STANFORD UNIVERSITY · PI Angelle Desiree LaBeaud · 2013 to 2026
$7.7M
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01AI102918NIAID NIH HHS R01 AI102918
6 · The paper itself

Abstract

Despite the increasing burden of dengue, the regional emergence of the virus in Kenya has not been examined. This study investigates the genetic structure and regional spread of dengue virus-2 in Kenya. Viral RNA from acutely ill patients in Kenya was enriched and sequenced. Six new dengue-2 genomes were combined with 349 publicly available genomes and phylogenies used to infer gene flow between Kenya and other countries. Analyses indicate two dengue-2 Cosmopolitan genotype lineages circulating in Kenya, linked to recent outbreaks in coastal Kenya and Burkina Faso. Lineages circulating in Western, Southern, and Eastern Africa exhibiting similar evolutionary features are also reported. Phylogeography suggests importation of dengue-2 into Kenya from East and Southeast Asia and bidirectional geneflow. Additional lineages circulating in Africa are also imported from East and Southeast Asia. These findings underscore how intermittent importations from East and Southeast Asia drive dengue-2 circulation in Kenya and Africa more broadly.

Indexed as

DengueDengue VirusEvolution, MolecularGenome, ViralMolecular EpidemiologyPhylogenyPhylogeographyRNA, ViralAfrica, EasternDisease OutbreaksGene FlowGenotypeHumansKenyaRNA, Viral

Identifiers

PMID39244569
PMCPMC11380673

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.