Evidence map›Paper›PMID 39244528›Full record

ArticleBMC microbiology2024

DUF1127-containing protein and ProQ had opposite effects on biofilm formation in Vibrio alginolyticus.

Ruonan Feng, Ying Chen, Tongxian Chen, Zhong Hu, Tao Peng

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ruonan Feng *Department of Biology, Shantou University, Shantou, 515063, Guangdong, China.
Ying Chen *Department of Biology, Shantou University, Shantou, 515063, Guangdong, China.
Tongxian ChenDepartment of Biology, Shantou University, Shantou, 515063, Guangdong, China.
Zhong HuDepartment of Biology, Shantou University, Shantou, 515063, Guangdong, China.
Tao PengSchool of Resources and Environmental Engineering, Jiangsu University of Technology, 1801 Zhongwu Avenue, Changzhou, 213001, China. tpeng@jsut.edu.cn.

Funding

Guang dong Natural Science Foundation-General Project 2024A1515010759Initial Funding of Jiangsu University of Technology KYY24053National Natural Science Foundation of China 42276158
6 · The paper itself

Abstract

The RNA binding protein is crucial for gene regulation at the post transcription level. In this study, functions of the DUF1127-containing protein and ProQ, which are RNA-binding proteins, were revealed in Vibrio alginolyticus. DUF1127 deletion increased the ability of biofilm formation, whereas ProQ deletion reduced the amount of biofilm. Moreover, extracellular proteinase secretion was significantly reduced in the DUF1127 deletion strain. ProQ, not DUF1127-containing protein, can help the cell to defense oxidative stress. Deletion of DUF1127 resulted in a higher ROS level in the cell, however, ProQ deletion showed no difference. RNA-seq unveiled the expression of genes involved in extracellular protease secretion were significantly downregulated and biofilm synthesis-related genes, such as rbsB and alsS, were differentially expressed in the DUF1127 deletion strain. ProQ affected the expression of genes involved in biofilm synthesis (flgC and flgE), virulence (betB and hutG), and oxidative stress. Moreover, the DUF1127-containing and ProQ affected the mRNA levels of various regulators, such as LysR and BetI. Overall, our study revealed that the DUF1127-containing protein and ProQ have crucial functions on biofilm formation in V. alginolyticus.

Indexed as

Bacterial ProteinsBiofilmsGene Expression Regulation, BacterialOxidative StressVibrio alginolyticusGene DeletionReactive Oxygen SpeciesRNA-Binding ProteinsVirulenceBacterial ProteinsReactive Oxygen SpeciesRNA-Binding ProteinsBiofilmDUF1127ProQRNA-binding proteinVibrio alginolyticus

Identifiers

PMID39244528
PMCPMC11380419

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.