Evidence map›Paper›PMID 39243305›Full record

ArticleVeterinary research communications2024

Molecular evolution and genotype shift of Porcine circoviruses type 2 in Vietnam.

Danh Cong Lai, Dung Khanh Thi Le, Trung Huu Nguyen, Manh Van Thach, Vo Thi Hue, Phan Van Le, Tram Ngoc Thi Ngo, Nam Minh Nguyen, Duy Tien Do

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Article in Veterinary research communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Danh Cong LaiNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, 68583, USA.
Dung Khanh Thi LeDepartment of Infectious Disease and Veterinary Public Health, Faculty of Animal Husbandry and Veterinary Medicine, Nong Lam University, Ho Chi Minh City, Vietnam.
Trung Huu NguyenZoetis Vietnam Company, Ho Chi Minh City, Vietnam.
Manh Van ThachZoetis Vietnam Company, Ho Chi Minh City, Vietnam.
Vo Thi HueZoetis Vietnam Company, Ho Chi Minh City, Vietnam.
Phan Van LeFaculty of Veterinary Medicine, Vietnam National University of Agriculture, Ha Noi, Vietnam.
Tram Ngoc Thi NgoDepartment of Infectious Disease and Veterinary Public Health, Faculty of Animal Husbandry and Veterinary Medicine, Nong Lam University, Ho Chi Minh City, Vietnam.
Nam Minh NguyenDepartment of Biomedical Engineering, School of Medicine, Vietnam National University Ho Chi Minh City (VNU-HCM), Ho Chi Minh City, Vietnam.
Duy Tien DoDepartment of Infectious Disease and Veterinary Public Health, Faculty of Animal Husbandry and Veterinary Medicine, Nong Lam University, Ho Chi Minh City, Vietnam. duy.dotien@hcmuaf.edu.vn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine Circovirus Type 2 (PCV2), a significant pathogen in the global swine industry, causes Porcine Circovirus Associated Diseases (PCVAD), contributing to substantial economic losses. This study investigates the genetic diversity and evolutionary dynamics of PCV2 in Vietnam from 2007 to 2023. We sequenced and analyzed 47 PCV2 genomes isolated from swine farms across Vietnam between 2022 and 2023, revealing predominant circulation of PCV2d (80.85%) followed by PCV2b (19.15%). Phylogenetic analysis identified PCV2 genotypes PCV2a, PCV2b, PCV2d, PCV2g, and PCV2h circulating in Vietnam, with PCV2d emerging as the most prevalent genotype. Comparison with historical data highlighted genotype shifts from PCV2b to PCV2d in 2014. Interestingly, PCV2h genotype was mainly observed between 2008 and 2012 but have not been detected since 2014. Regional analysis indicated varied PCV2 epidemiological patterns between northern and southern Vietnam. Amino acid substitutions within the capsid protein were identified, predominantly in antigenic regions critical for immune recognition. Positive selection analysis identified multiple sites under evolutionary pressure, indicating ongoing adaptation of Vietnamese PCV2 strains. These findings enhance understanding of PCV2 dynamics in Vietnam and underscore the importance of continuous surveillance and adaptive management strategies in controlling PCV2-associated diseases in swine populations.

Indexed as

Circoviridae InfectionsCircovirusEvolution, MolecularGenotypePhylogenySwine DiseasesAnimalsGenetic VariationGenome, ViralSwineVietnamEpidemicsGenotype shiftMolecular evolutionPCV2Vietnam

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.