Evidence map›Paper›PMID 39242808›Full record

Articlenpj biodiversity2023

Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation.

Christian R Voolstra, Benjamin C C Hume, Eric J Armstrong, Guinther Mitushasi, Barbara Porro, Nicolas Oury, Sylvain Agostini, Emilie Boissin, Julie Poulain, Quentin Carradec and 28 more

Abstract read
In one paragraph

Article in npj biodiversity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  14. Dominance of the coralEcology and evolution · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Christian R Voolstra *Department of Biology, University of Konstanz, 78457, Konstanz, Germany. christian.voolstra@uni-konstanz.de.
Benjamin C C Hume *Department of Biology, University of Konstanz, 78457, Konstanz, Germany.
Eric J Armstrong *PSL Research University, EPHE, CNRS, Université de Perpignan, Perpignan, France.
Guinther MitushasiShimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan.
Barbara PorroUniversité Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
Nicolas OuryUMR 250/9220 ENTROPIE UR-IRD-CNRS-Ifremer-UNC, Laboratoire d'Excellence CORAIL, Université de la Réunion, St Denis de la Réunion, France.
Sylvain AgostiniShimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan.
Emilie BoissinPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, France.
Julie PoulainGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Quentin CarradecGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
David A Paz-GarcíaCentro de Investigaciones Biológicas del Noroeste (CIBNOR), Av. IPN 195, Col. Playa Palo de Santa Rita Sur, La Paz, 23096, Baja California Sur, México.
Didier ZoccolaLIA ROPSE, Laboratoire International Associé Université Côte d'Azur-Centre Scientifique de Monaco, Monaco, Principality of Monaco.
Hélène MagalonUMR 250/9220 ENTROPIE UR-IRD-CNRS-Ifremer-UNC, Laboratoire d'Excellence CORAIL, Université de la Réunion, St Denis de la Réunion, France.
Clémentine MoulinFondation Tara Océan, Base Tara, 8 rue de Prague, 75 012, Paris, France.
Guillaume BourdinSchool of Marine Sciences, University of Maine, Orono, 04469, ME, USA.
Guillaume IwankowPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, France.
Sarah RomacResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Bernard BanaigsPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, France.
Emmanuel BossSchool of Marine Sciences, University of Maine, Orono, 04469, ME, USA.
Chris BowlerResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Colomban de VargasResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Eric DouvilleLaboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France.
Michel FloresWeizmann Institute of Science, Department of Earth and Planetary Sciences, 76100, Rehovot, Israel.
Paola FurlaUniversité Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
Pierre E GalandSorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, Banyuls-sur-Mer, France.
Eric GilsonUniversité Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
Fabien LombardResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
Stéphane PesantEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Stéphanie ReynaudLIA ROPSE, Laboratoire International Associé Université Côte d'Azur-Centre Scientifique de Monaco, Monaco, Principality of Monaco.
Matthew B SullivanDepartment of Microbiology and Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, OH, USA.
Shinichi SunagawaDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zurich, Switzerland.
Olivier P ThomasSchool of Biological and Chemical Sciences, Ryan Institute, University of Galway, University Road, H91 TK33, Galway, Ireland.
Romain TroubléFondation Tara Océan, Base Tara, 8 rue de Prague, 75 012, Paris, France.
Rebecca Vega ThurberDepartment of Microbiology, Oregon State University, Corvallis, OR, USA.
Patrick WinckerGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Serge PlanesPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, France.
Denis AllemandLIA ROPSE, Laboratoire International Associé Université Côte d'Azur-Centre Scientifique de Monaco, Monaco, Principality of Monaco.
Didier Forcioli *Université Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France. didier.forcioli@univ-cotedazur.fr.

Funding

Agence Nationale de la Recherche "Coralgene"ANR-17-CE02-0020Agence Nationale de la Recherche "France Génomique" ANR-10-INBS-09H2020 Marie Skłodowska-Curie Actions MC-CIG-618480IDEX UCAJedi ANR-15-IDEX-0001JST Spring JPMJSP2124Labex Signalife ANR-11-LABX-0028University of Konstanz AFF funding
6 · The paper itself

Abstract

Tropical coral reefs are among the most affected ecosystems by climate change and face increasing loss in the coming decades. Effective conservation strategies that maximize ecosystem resilience must be informed by the accurate characterization of extant genetic diversity and population structure together with an understanding of the adaptive potential of keystone species. Here we analyzed samples from the Tara Pacific Expedition (2016-2018) that completed an 18,000 km longitudinal transect of the Pacific Ocean sampling three widespread corals-Pocillopora meandrina, Porites lobata, and Millepora cf. platyphylla-across 33 sites from 11 islands. Using deep metagenomic sequencing of 269 colonies in conjunction with morphological analyses and climate variability data, we can show that despite a targeted sampling the transect encompasses multiple cryptic species. These species exhibit disparate biogeographic patterns and, most importantly, distinct evolutionary patterns in identical environmental regimes. Our findings demonstrate on a basin scale that evolutionary trajectories are species-specific and can only in part be predicted from the environment. This highlights that conservation strategies must integrate multi-species investigations to discern the distinct genomic footprints shaped by selection as well as the genetic potential for adaptive change.

Identifiers

PMID39242808
PMCPMC11332039

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.