Evidence map›Paper›PMID 39242775›Full record

ArticleEMBO reports2024

Ubiquitylation of nucleic acids by DELTEX ubiquitin E3 ligase DTX3L.

Kang Zhu, Chatrin Chatrin, Marcin J Suskiewicz, Vincent Aucagne, Benjamin Foster, Benedikt M Kessler, Ian Gibbs-Seymour, Dragana Ahel, Ivan Ahel

Abstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
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  11. Article
  12. Article
  13. The Molecular Toolbox for Linkage Type-Specific Analysis of Ubiquitin Signaling.Chembiochem : a European journal of chemical biology · 2025
    Review
  14. Insights into non-proteinaceous ubiquitination.Biochemical Society transactions · 2025
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kang Zhu *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK. kang.zhu@path.ox.ac.uk.ORCID 0000-0003-2623-3331
Chatrin Chatrin *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID 0000-0002-5666-3175
Marcin J SuskiewiczCentre de Biophysique Moléculaire, CNRS UPR 4301, Orléans, France.ORCID 0000-0002-3279-6571
Vincent AucagneCentre de Biophysique Moléculaire, CNRS UPR 4301, Orléans, France.ORCID 0000-0002-2647-0188
Benjamin FosterDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, UK.ORCID 0000-0003-0670-2321
Benedikt M KesslerTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK.ORCID 0000-0002-8160-2446
Ian Gibbs-SeymourDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, UK.ORCID 0000-0002-6904-2642
Dragana AhelSir William Dunn School of Pathology, University of Oxford, Oxford, UK. dragana.ahel@path.ox.ac.uk.ORCID 0000-0002-7042-156X
Ivan AhelSir William Dunn School of Pathology, University of Oxford, Oxford, UK. ivan.ahel@path.ox.ac.uk.ORCID 0000-0002-9446-3756

Funding

Cancer Research UK 22284Cancer Research UK 24670Cancer Research UK (CRUK) C35050/A22284Cancer Research UK (CRUK) C62538/A24670EC | European Research Council (ERC) 101078837Ovarian Cancer Research Alliance (OCRA) 813369Oxford University Challenge Seed Fund USCF 456Oxford University Press John Fell Research Fund 0006091 and 0014766UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/R007195/1UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W016613/1University of Oxford Medical Sciences Division Pump Priming Award 006353Wellcome TrustWellcome Trust 210634Wellcome Trust 223107Wellcome Trust 302632
6 · The paper itself

Abstract

The recent discovery of non-proteinaceous ubiquitylation substrates broadened our understanding of this modification beyond conventional protein targets. However, the existence of additional types of substrates remains elusive. Here, we present evidence that nucleic acids can also be directly ubiquitylated via ester bond formation. DTX3L, a member of the DELTEX family E3 ubiquitin ligases, ubiquitylates DNA and RNA in vitro and that this activity is shared with DTX3, but not with the other DELTEX family members DTX1, DTX2 and DTX4. DTX3L shows preference for the 3'-terminal adenosine over other nucleotides. In addition, we demonstrate that ubiquitylation of nucleic acids is reversible by DUBs such as USP2, JOSD1 and SARS-CoV-2 PLpro. Overall, our study proposes reversible ubiquitylation of nucleic acids in vitro and discusses its potential functional implications.

Indexed as

UbiquitinationUbiquitin-Protein LigasesCOVID-19DNAHumansNucleic AcidsRNASARS-CoV-2Substrate SpecificityUbiquitinDNADTX3L protein, humanNucleic AcidsRNAUbiquitinUbiquitin-Protein LigasesDELTEXDTX3LGenome StabilityNucleic Acid ModificationUbiquitin

Identifiers

PMID39242775
PMCPMC11467253

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.