Evidence map›Paper›PMID 39241064›Full record

ArticleScience advances2024

Thr

Rosamaria Y Moreno, Svetlana B Panina, Seema Irani, Haley A Hardtke, Renee Stephenson, Brendan M Floyd, Edward M Marcotte, Qian Zhang, Y Jessie Zhang

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rosamaria Y MorenoDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.ORCID 0000-0001-8192-6005
Svetlana B PaninaDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.
Seema IraniDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.
Haley A HardtkeDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.ORCID 0000-0002-3718-5286
Renee StephensonDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.
Brendan M FloydDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.
Edward M MarcotteDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.ORCID 0000-0001-8808-180X
Qian ZhangDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.ORCID 0009-0003-5931-2084
Y Jessie ZhangDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.

Funding

Proteomics and model organism humanization to decode human geneticsR35GM122480 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI EDWARD M MARCOTTE · 2017 to 2026
$5.4M
Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Deciphering the phosphorylation pattern of RNA polymerase II for eukaryotic transcriptionR35GM148356 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Yan Jessie Zhang · 2023 to 2026
$2.3M
Interpretation of the phosphorylation code of RNA polymerase II during eukaryotic transcriptionR01GM125882 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S., ZHANG, YAN JESSIE · 2018 to 2021
$1.4M
NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM125882NIGMS NIH HHS R35 GM122480NIGMS NIH HHS R35 GM148356
6 · The paper itself

Abstract

RNA polymerase II relies on a repetitive sequence domain (YSPTSPS) within its largest subunit to orchestrate transcription. While phosphorylation on serine-2/serine-5 of the carboxyl-terminal heptad repeats is well established, threonine-4's role remains enigmatic. Paradoxically, threonine-4 phosphorylation was only detected after transcription end sites despite functionally implicated in pausing, elongation, termination, and messenger RNA processing. Our investigation revealed that threonine-4 phosphorylation detection was obstructed by flanking serine-5 phosphorylation at the onset of transcription, which can be removed selectively. Subsequent proteomic analyses identified many proteins recruited to transcription via threonine-4 phosphorylation, which previously were attributed to serine-2. Loss of threonine-4 phosphorylation greatly reduces serine-2 phosphorylation, revealing a cross-talk between the two marks. Last, the function analysis of the threonine-4 phosphorylation highlighted its role in alternative 3'-end processing within pro-proliferative genes. Our findings unveil the true genomic location of this evolutionarily conserved phosphorylation mark and prompt a reassessment of functional assignments of the carboxyl-terminal domain.

Indexed as

RNA Polymerase IIThreonineTranscription, GeneticHumansPhosphorylationProteomicsRNA 3' End ProcessingSerineRNA Polymerase IISerineThreonine

Identifiers

PMID39241064
PMCPMC11378909

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.