Evidence map›Paper›PMID 39240756›Full record

ArticleeLife2024

Reversions mask the contribution of adaptive evolution in microbiomes.

Paul A Torrillo, Tami D Lieberman

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Dynamics of dN/dS within recombining bacterial populations.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Paul A TorrilloInstitute for Medical Engineering and Sciences, Massachusetts Institute of Technology, Cambridge, United States.ORCID https://orcid.org/0000-0002-4618-6061
Tami D LiebermanInstitute for Medical Engineering and Sciences, Massachusetts Institute of Technology, Cambridge, United States.ORCID https://orcid.org/0000-0001-5430-3937

Funding

Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
An Evolutionary Framework For Identifying Determinants Of Colonization In Human MicrobiomesDP2GM140922 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LIEBERMAN, TAMI D · 2020 to 2020
$2.3M
National Science Foundation Graduate Research Fellowship ProgramNIGMS NIH HHS DP2 GM140922NIGMS NIH HHS T32 GM087237NIH HHS 1DP2GM140922-01
6 · The paper itself

Abstract

When examining bacterial genomes for evidence of past selection, the results depend heavily on the mutational distance between chosen genomes. Even within a bacterial species, genomes separated by larger mutational distances exhibit stronger evidence of purifying selection as assessed by d

Indexed as

Evolution, MolecularMutationAdaptation, PhysiologicalBacteriaBacteroidesGastrointestinal MicrobiomeGenome, BacterialMicrobiotaModels, GeneticSelection, GeneticBacteroidalesevolutionary biologyhuman microbiomeinfectious diseasemicrobiologymolecular evolutionwithin-person evolution

Identifiers

PMID39240756
PMCPMC11379459

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.