Evidence map›Paper›PMID 39239753›Full record

ArticleChembiochem : a European journal of chemical biology2025

Discovery of Lacto-N-Biosidases and a Novel N-Acetyllactosaminidase Activity in the CAZy Family GH20: Functional Diversity and Structural Insights.

Marlene Vuillemin, Jan Muschiol, Yan Zhang, Jesper Holck, Kristian Barrett, Jens Preben Morth, Anne S Meyer, Birgitte Zeuner

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Reverse prediction of carbohydrate esterase polysaccharide targets.Biotechnology for biofuels and bioproducts · 2026
    Article
  3. Article
  4. Article
  5. Crystal Structure of Glycoside Hydrolase Family 20 Lacto-Journal of applied glycoscience · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marlene VuilleminDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0002-1776-7844
Jan MuschiolDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0002-2852-6747
Yan ZhangDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.
Jesper HolckDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0002-8072-1101
Kristian BarrettDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0002-4170-4253
Jens Preben MorthDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0003-4077-0192
Anne S MeyerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0001-8910-9931
Birgitte ZeunerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kgs. Lyngby, Denmark.ORCID https://orcid.org/0000-0002-8593-6742

Funding

DESY MX846DTU BioengineeringESRF ID30BESRF MX2413Innovation Fund Denmark 2077-00027BInnovation Fund Denmark 9068-00006B
6 · The paper itself

Abstract

The glycoside hydrolase family 20 (GH20) predominantly features N-acetylhexosaminidases (EC 3.2.1.52), with only few known lacto-N-biosidases (EC 3.2.1.140; LNBases). LNBases catalyze the degradation of lacto-N-tetraose (LNT), a prominent component of human milk oligosaccharides, thereby supporting a healthy infant gut microbiome development. We investigated GH20 diversity to discover novel enzymes that release disaccharides such as lacto-N-biose (LNB). Our approach combined peptide clustering, sequence analysis, and 3D structure model evaluation to assess active site topologies, focusing on the presence of a subsite -2. Five LNBases were active on pNP-LNB and four showed activity on LNT. One enzyme displayed activity on both pNP-LacNAc and pNP-LNB, establishing the first report of N-acetyllactosaminidase (LacNAcase) activity. Exploration of this enzyme cluster led to the identification of four additional enzymes sharing this dual substrate specificity. Comparing the determined crystal structure of a specific LNBase (TrpyGH20) and the first crystal structure of an enzyme with dual LacNAcase/LNBase activity (TrdeGH20) revealed a highly conserved subsite -1, common to GH20 enzymes, while the -2 subsites varied significantly. TrdeGH20 had a wider subsite -2, accommodating Gal with both β1,4- and β1,3-linkages to the GlcNAc in subsite -1. Biotechnological applications of these enzymes may include structural elucidation of complex carbohydrates and glycoengineering.

Indexed as

Glycoside HydrolasesOligosaccharidesCatalytic DomainHumansModels, MolecularSubstrate SpecificityGlycoside Hydrolaseslacto-N-neotetraoseOligosaccharidesEnzyme catalysisGH20Lacto-N-biosidaseProtein structuresβ-N-acetyllactosaminidase

Identifiers

PMID39239753
PMCPMC11776370

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.