Evidence map›Paper›PMID 39237615›Full record

ArticleNature communications2024

The scaffolding function of LSD1 controls DNA methylation in mouse ESCs.

Sandhya Malla, Kanchan Kumari, Carlos A García-Prieto, Jonatan Caroli, Anna Nordin, Trinh T T Phan, Devi Prasad Bhattarai, Carlos Martinez-Gamero, Eshagh Dorafshan, Stephanie Stransky and 15 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Sandhya MallaDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Kanchan KumariDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Carlos A García-PrietoCancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, Barcelona, Spain.ORCID 0000-0001-5021-6916
Jonatan CaroliDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Anna NordinWallenberg Centre for Molecular Medicine, Linköping University, Linköping, Sweden.ORCID 0000-0002-5868-4797
Trinh T T PhanDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000-0002-5850-0855
Devi Prasad BhattaraiDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Carlos Martinez-GameroDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Eshagh DorafshanDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Stephanie StranskyDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID 0000-0003-0844-2754
Damiana Álvarez-ErricoCancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, Barcelona, Spain.ORCID 0000-0002-7921-5164
Paulina Avovome SaikiDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Weiyi LaiState Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.
Cong LyuState Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.
Ludvig LizanaDepartment of Physics, Integrated Science Lab, Umeå University, Umeå, Sweden.ORCID 0000-0003-3174-8145
Jonathan D GilthorpeDepartment of Medical and Translational Biology, Umeå University, Umeå, Sweden.ORCID 0000-0002-6884-4774
Hailin WangState Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-1843-999X
Simone SidoliDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID 0000-0001-9073-6641
Andre MateusDepartment of Chemistry, Umeå University, Umeå, Sweden.ORCID 0000-0001-6870-0677
Dung-Fang LeeDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000-0003-2387-597X
Claudio CantùWallenberg Centre for Molecular Medicine, Linköping University, Linköping, Sweden.ORCID 0000-0003-1547-5415
Manel EstellerCancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, Barcelona, Spain.ORCID 0000-0003-4490-6093
Andrea MatteviDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID 0000-0002-9523-7128
Angel-Carlos RomanDepartment of Biochemistry, Molecular Biology and Genetics, University of Extremadura, Badajoz, Spain.
Francesca AguiloDepartment of Molecular Biology, Umeå University, Umeå, Sweden. francesca.aguilo@umu.se.ORCID 0000-0002-2374-2045

Funding

Genetic dissection of Cardiac Conduction System homeostasis and RepairR01HL142704 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Jun Wang · 2020 to 2026
$3.0M
Dissecting and Targeting RB1-Mutant OsteosarcomaR01CA246130 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LEE, DUNG-FANG · 2021 to 2025
$2.1M
Cancerfonden (Swedish Cancer Society) 190337 Pj; 22 2455 PjKempestiftelserna (Kempe Foundations) JCK-2150 and JCSMK22-0109NCI NIH HHS R01 CA246130NHLBI NIH HHS R01 HL142704Vetenskapsrådet (Swedish Research Council) 2017-01636 and 2022-01322
6 · The paper itself

Abstract

Lysine-specific histone demethylase 1 (LSD1), which demethylates mono- or di- methylated histone H3 on lysine 4 (H3K4me1/2), is essential for early embryogenesis and development. Here we show that LSD1 is dispensable for mouse embryonic stem cell (ESC) self-renewal but is required for mouse ESC growth and differentiation. Reintroduction of a catalytically-impaired LSD1 (LSD1

Indexed as

CCAAT-Enhancer-Binding ProteinsCell DifferentiationDNA (Cytosine-5-)-Methyltransferase 1DNA MethylationHistone DemethylasesMice, KnockoutMouse Embryonic Stem CellsUbiquitin-Protein LigasesAnimalsCell ProliferationHistone Deacetylase 1HistonesMiceUbiquitinationCCAAT-Enhancer-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1Dnmt1 protein, mouseHdac1 protein, mouseHistone Deacetylase 1Histone DemethylasesHistonesKDM1a protein, mouseUbiquitin-Protein LigasesUhrf1 protein, mouse

Identifiers

PMID39237615
PMCPMC11377572

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.