Evidence map›Paper›PMID 39237489›Full record

ArticleNature communications2024

Rapid discovery and evolution of nanosensors containing fluorogenic amino acids.

Erkin Kuru, Jonathan Rittichier, Helena de Puig, Allison Flores, Subhrajit Rout, Isaac Han, Abigail E Reese, Thomas M Bartlett, Fabio De Moliner, Sylvie G Bernier and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Building like a Coral-Parallelized, Multiscale Biofabrication.Advanced materials (Deerfield Beach, Fla.) · 2026
    Review
  5. Expedient Synthesis ofJournal of the American Chemical Society · 2026
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Erkin Kuru *Department of Genetics, Harvard Medical School, Boston, MA, USA. erkin_kuru@hms.harvard.edu.ORCID 0000-0002-2356-0858
Jonathan Rittichier *Department of Genetics, Harvard Medical School, Boston, MA, USA.
Helena de PuigWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.ORCID 0000-0002-5368-6996
Allison FloresDepartment of Genetics, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-2655-8323
Subhrajit RoutDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Isaac HanWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.
Abigail E ReeseIRR Chemistry Hub and Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, UK.
Thomas M BartlettDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.
Fabio De MolinerIRR Chemistry Hub and Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, UK.
Sylvie G BernierWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.
Jason D GalpinDepartment of Molecular Physiology and Biophysics, The University of Iowa, Iowa City, IA, USA.ORCID 0000-0003-1923-5312
Jorge MarchandDepartment of Genetics, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-7765-610X
William BedellWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.
Lindsey Robinson-McCarthyDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Christopher A AhernDepartment of Molecular Physiology and Biophysics, The University of Iowa, Iowa City, IA, USA.
Thomas G BernhardtDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.
David Z RudnerDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.
James J CollinsWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.ORCID 0000-0002-5560-8246
Marc VendrellIRR Chemistry Hub and Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, UK. marc.vendrell@ed.ac.uk.ORCID 0000-0002-5392-9740
George M ChurchDepartment of Genetics, Harvard Medical School, Boston, MA, USA. gchurch@genetics.med.harvard.edu.ORCID 0000-0001-6232-9969

Funding

Chemical biology of voltage-gated cation channelsR35GM148239 · NIGMS · UNIVERSITY OF IOWA · PI Christopher A Ahern · 2023 to 2026
$2.5M
NIGMS NIH HHS R35 GM148239U.S. Department of Energy (DOE) Grant DE-FG02-02ER63445
6 · The paper itself

Abstract

Binding-activated optical sensors are powerful tools for imaging, diagnostics, and biomolecular sensing. However, biosensor discovery is slow and requires tedious steps in rational design, screening, and characterization. Here we report on a platform that streamlines biosensor discovery and unlocks directed nanosensor evolution through genetically encodable fluorogenic amino acids (FgAAs). Building on the classical knowledge-based semisynthetic approach, we engineer ~15 kDa nanosensors that recognize specific proteins, peptides, and small molecules with up to 100-fold fluorescence increases and subsecond kinetics, allowing real-time and wash-free target sensing and live-cell bioimaging. An optimized genetic code expansion chemistry with FgAAs further enables rapid (~3 h) ribosomal nanosensor discovery via the cell-free translation of hundreds of candidates in parallel and directed nanosensor evolution with improved variant-specific sensitivities (up to ~250-fold) for SARS-CoV-2 antigens. Altogether, this platform could accelerate the discovery of fluorogenic nanosensors and pave the way to modify proteins with other non-standard functionalities for diverse applications.

Indexed as

Amino AcidsBiosensing TechniquesFluorescent DyesSARS-CoV-2COVID-19HumansNanotechnologyPeptidesAmino AcidsFluorescent DyesPeptides

Identifiers

PMID39237489
PMCPMC11377706

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.