Evidence map›Paper›PMID 39236072›Full record

ArticlePLoS pathogens2024

Dual-role epitope on SARS-CoV-2 spike enhances and neutralizes viral entry across different variants.

Gang Ye, Fan Bu, Ruangang Pan, Alise Mendoza, Divyasha Saxena, Jian Zheng, Stanley Perlman, Bin Liu, Fang Li

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gang YeDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Fan BuDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Ruangang PanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, Iowa, United States of America.
Alise MendozaDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Divyasha SaxenaCenter for Predictive Medicine, University of Louisville, Louisville, Kentucky, United States of America.
Jian ZhengCenter for Predictive Medicine, University of Louisville, Louisville, Kentucky, United States of America.
Stanley PerlmanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, Iowa, United States of America.
Bin LiuHormel Institute, University of Minnesota, Austin, Minnesota, United States of America.
Fang LiDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.ORCID 0000-0002-1958-366X

Funding

Project 5: Pandemic Virus Helicase InhibitorsU19AI171954 · NIAID · UNIVERSITY OF MINNESOTA · PI Donghoon Chung · 2022 to 2026
$100.9M
Mechanisms of MERS-CoV Entry, Cross-species Transmission and PathogenesisR01AI110700 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S, LI, FANG · 2015 to 2024
$7.4M
Receptor recognition mechanisms of coronavirusesR01AI089728 · NIAID · UNIVERSITY OF MINNESOTA · PI Fang Li, Timothy Patrick Sheahan · 2010 to 2026
$4.7M
Novel nanobodies to prevent and treat SARS-CoV-2 and other pathogenic human coronavirusesR01AI157975 · NIAID · NEW YORK BLOOD CENTER · PI DU, LANYING, LI, FANG · 2020 to 2025
$3.9M
NIAID NIH HHS R01 AI089728NIAID NIH HHS R01 AI110700NIAID NIH HHS R01 AI157975NIAID NIH HHS U19 AI171954
6 · The paper itself

Abstract

Grasping the roles of epitopes in viral glycoproteins is essential for unraveling the structure and function of these proteins. Up to now, all identified epitopes have been found to either neutralize, have no effect on, or enhance viral entry into cells. Here, we used nanobodies (single-domain antibodies) as probes to investigate a unique epitope on the SARS-CoV-2 spike protein, located outside the protein's receptor-binding domain. Nanobody binding to this epitope enhances the cell entry of prototypic SARS-CoV-2, while neutralizing the cell entry of SARS-CoV-2 Omicron variant. Moreover, nanobody binding to this epitope promotes both receptor binding activity and post-attachment activity of prototypic spike, explaining the enhanced viral entry. The opposite occurs with Omicron spike, explaining the neutralized viral entry. This study reveals a unique epitope that can both enhance and neutralize viral entry across distinct viral variants, suggesting that epitopes may vary their roles depending on the viral context. Consequently, antibody therapies should be assessed across different viral variants to confirm their efficacy and safety.

Indexed as

Antibodies, NeutralizingCOVID-19EpitopesSARS-CoV-2Spike Glycoprotein, CoronavirusVirus InternalizationAnimalsAntibodies, ViralHumansSingle-Domain AntibodiesAntibodies, NeutralizingAntibodies, ViralEpitopesSingle-Domain AntibodiesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID39236072
PMCPMC11407660

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.