Evidence map›Paper›PMID 39235995›Full record

ArticlePLoS neglected tropical diseases2024

Isolation and characterization of genetic variants of Orthohantavirus hantanense from clinical cases of HFRS in Jiangxi Province, China.

Shiwen Liu, Zhishi Deng, Jianxiong Li, Long Zou, Xiuhui Sun, Xiaoqing Liu, Yong Shi, Shunqiang Huang, Yangbowen Wu, Jinhui Lei and 4 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Shiwen LiuNanchang Key Laboratory of Microbial Resources Exploitation & Utilization from Poyang Lake Wetland, College of Life Sciences, Jiangxi Normal University, Nanchang, Jiangxi, China.ORCID 0000-0003-3752-3836
Zhishi DengDepartment of Infectious Diseases, Gao'an People's Hospital, Gao'an, Jiangxi, China.
Jianxiong LiLaboratory of Viral Infectious Disease, the Key Laboratory of Important and Emerging Viral Infectious Diseases of Jiangxi Health Commission, Jiangxi Provincial Center for Disease Control and Prevention, Nanchang, Jiangxi, China.
Long ZouNanchang Key Laboratory of Microbial Resources Exploitation & Utilization from Poyang Lake Wetland, College of Life Sciences, Jiangxi Normal University, Nanchang, Jiangxi, China.
Xiuhui SunLaboratory Department, Chongren County Center for Disease Prevention and Control, Chongren, Jiangxi, China.
Xiaoqing LiuLaboratory of Viral Infectious Disease, the Key Laboratory of Important and Emerging Viral Infectious Diseases of Jiangxi Health Commission, Jiangxi Provincial Center for Disease Control and Prevention, Nanchang, Jiangxi, China.
Yong ShiLaboratory of Viral Infectious Disease, the Key Laboratory of Important and Emerging Viral Infectious Diseases of Jiangxi Health Commission, Jiangxi Provincial Center for Disease Control and Prevention, Nanchang, Jiangxi, China.
Shunqiang HuangDepartment of Infectious Diseases, Gao'an People's Hospital, Gao'an, Jiangxi, China.
Yangbowen WuLaboratory of Viral Infectious Disease, the Key Laboratory of Important and Emerging Viral Infectious Diseases of Jiangxi Health Commission, Jiangxi Provincial Center for Disease Control and Prevention, Nanchang, Jiangxi, China.
Jinhui LeiDepartment of Infectious Diseases, Gao'an People's Hospital, Gao'an, Jiangxi, China.
Peipei LiuDepartment of Infectious Diseases, Gao'an People's Hospital, Gao'an, Jiangxi, China.
Pei ZhangInstitutional Center for Shared Technologies and Facilities, Wuhan Institute of Virology, Wuhan, Hubei, China.
Ying XiongLaboratory of Viral Infectious Disease, the Key Laboratory of Important and Emerging Viral Infectious Diseases of Jiangxi Health Commission, Jiangxi Provincial Center for Disease Control and Prevention, Nanchang, Jiangxi, China.ORCID 0009-0001-8619-7005
Zhong-Er LongNanchang Key Laboratory of Microbial Resources Exploitation & Utilization from Poyang Lake Wetland, College of Life Sciences, Jiangxi Normal University, Nanchang, Jiangxi, China.ORCID 0000-0002-1639-8258

Funding

Jiangxi Provincial Key Laboratory of Epidemic Prevention and Control 2024SSY06021Natural Science Foundation of China 82360771
6 · The paper itself

Abstract

backgroundHemorrhagic fever with renal syndrome (HFRS) is a severe public health problem in Jiangxi province, China. Previous studies reported genetic variants of Orthohantavirus hantanense (Hantaan virus, HTNV) in rodents in this area. However, the relationship between HTNV variants and human infection needs to be confirmed. This study aimed to identify the HTNV variants in patients and to understand the clinical characteristics of HFRS caused by these variants.

methodsSamples were collected from hospitalized suspected cases of HFRS during the acute phase. HFRS cases were confirmed using quantitative real-time RT-PCR. Peripheral blood mononuclear cells (PBMC) from patients with HFRS were inoculated into Vero-E6 cells for viral isolation. The genomic sequences of HTNV from patients were obtained by amplicon-based next-generation sequencing. A retrospective analysis was conducted on the clinical characteristics of the patients.

resultsHTNV RNA was detected in 53 of 183 suspected HFRS patients. Thirteen HTNVs were isolated from 32 PBMCs of HFRS cases. Whole genome sequences of 14 HTNVs were obtained, including 13 isolates in cell culture from 13 patients, and one from plasma of the fatal case which was not isolated successfully in cell culture. Genetic analysis revealed that the HTNV sequence from the 14 patients showed significant variations in nucleotide and amino acid to the HTNV strains found in other areas. Fever (100%, 53/53), thrombocytopenia (100%, 53/53), increased serum aspartate aminotransferase (100%, 53/53), and increased lactate dehydrogenase (96.2%, 51/53) were the most common characteristics. Severe acute kidney injury was observed in 13.2% (7/53) of cases. Clinical symptoms, such as pain, petechiae, and gastrointestinal or respiratory symptoms were uncommon.

conclusionThe HTNV genetic variants cause human infections in Jiangxi. The clinical symptoms of HFRS caused by the HTNV genetic variant during the acute phase are atypical. In addition to renal dysfunction, attention should be paid to the common liver injuries caused by these genetic variants.

Indexed as

Genetic VariationHemorrhagic Fever with Renal SyndromeAdolescentAdultAgedAnimalsChinaChlorocebus aethiopsFemaleGenome, ViralHantaan virusHumansLeukocytes, MononuclearMaleMiddle AgedOrthohantavirusRNA, Viral

Identifiers

PMID39235995
PMCPMC11376573

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.