Evidence map›Paper›PMID 39234218›Full record

ArticleJAC-antimicrobial resistance2024

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of

N Stoesser, R George, Z Aiken, H T T Phan, S Lipworth, T P Quan, A J Mathers, N De Maio, A C Seale, D W Eyre and 8 more

Abstract read
In one paragraph

Article in JAC-antimicrobial resistance, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Lineage-specific evolution and resistance-virulence divergence inAntimicrobial agents and chemotherapy · 2025
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

N StoesserNuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID https://orcid.org/0000-0002-4508-7969
R GeorgeDepartment of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK.
Z AikenDepartment of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK.
H T T PhanAcademic Unit of Clinical and Experimental Sciences, University of Southampton, Southampton, UK.
S LipworthNuffield Department of Medicine, University of Oxford, Oxford, UK.
T P QuanNuffield Department of Medicine, University of Oxford, Oxford, UK.
A J MathersDepartment of Pathology, University of Virginia School of Medicine, Charlottesville, VA, USA.
N De MaioGoldman Group, EMBL-European Bioinformatics Institute, Cambridge, UK.
A C SealeWarwick Medical School - Health Sciences, University of Warwick, Coventry, UK.
D W EyreNuffield Department of Medicine, University of Oxford, Oxford, UK.
A VaughanNuffield Department of Medicine, University of Oxford, Oxford, UK.
J SwannNuffield Department of Medicine, University of Oxford, Oxford, UK.
T E A PetoNuffield Department of Medicine, University of Oxford, Oxford, UK.
D W CrookNuffield Department of Medicine, University of Oxford, Oxford, UK.
J CawthorneDepartment of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK.
A DodgsonDepartment of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK.
A S WalkerNuffield Department of Medicine, University of Oxford, Oxford, UK.
TRACE Investigators Group

Funding

Wellcome Trust
6 · The paper itself

Abstract

Background: Healthcare-associated wastewater and asymptomatic patient reservoirs colonized by carbapenemase-producing Enterobacterales (CPE) contribute to nosocomial CPE dissemination, but the characteristics and dynamics of this remain unclear. Methods: We systematically sampled wastewater sites ( Results: Wastewater site KPC-E-positivity was substantial [101/349 sites (28.9%); 228/5601 (4.1%) patients cultured]. Thirteen KPC-E species and 109 strains were identified using genomics, and 24% of wastewater and 26% of patient KPC-E-positive samples harboured one or more strains. Most diversity was explained by the individual niche, suggesting localized factors are important in selection and spread. Tn Conclusions: We identified substantial and diverse KPC-E colonization of wastewater sites and patients in this hospital setting. Reservoir and niche-specific factors (e.g. microbial interactions, selection pressures), and different strains and mobile genetic elements likely affect transmission dynamics. This should be considered in surveillance and control strategies.

Identifiers

PMID39234218
PMCPMC11369815

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.