Evidence map›Paper›PMID 39233922›Full record

ArticleFrontiers in chemistry2024

Thermal inkjet makes label-free single-cell proteomics accessible and easy.

Stanislau Stanisheuski, Arpa Ebrahimi, Kavi Aashish Vaidya, Hyo Sang Jang, Liping Yang, Alex Jordan Eddins, Carrie Marean-Reardon, Maria Clara Franco, Claudia Susanne Maier

Abstract read
In one paragraph

Article in Frontiers in chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Stanislau StanisheuskiDepartment of Chemistry, Oregon State University, Corvallis, OR, United States.
Arpa EbrahimiDepartment of Chemistry, Oregon State University, Corvallis, OR, United States.
Kavi Aashish VaidyaDepartment of Biochemistry and Biophysics, College of Science, Oregon State University, Corvallis, OR, United States.
Hyo Sang JangHP Inc., Corvallis, OR, United States.
Liping YangDepartment of Chemistry, Oregon State University, Corvallis, OR, United States.
Alex Jordan EddinsDepartment of Biochemistry and Biophysics, College of Science, Oregon State University, Corvallis, OR, United States.
Carrie Marean-ReardonDepartment of Biochemistry and Biophysics, College of Science, Oregon State University, Corvallis, OR, United States.
Maria Clara FrancoDepartment of Biochemistry and Biophysics, College of Science, Oregon State University, Corvallis, OR, United States.
Claudia Susanne MaierDepartment of Chemistry, Oregon State University, Corvallis, OR, United States.

Funding

Redox Signaling in NeurofibromatosisR01NS102479 · NINDS · OREGON STATE UNIVERSITY · PI FRANCO, MARIA CLARA · 2019 to 2023
$1.7M
NINDS NIH HHS R01 NS102479
6 · The paper itself

Abstract

In this study, we adapted an HP D100 Single Cell Dispenser - a novel low-cost thermal inkjet (TIJ) platform with impedance-based single cell detection - for dispensing of individual cells and one-pot sample preparation. We repeatedly achieved label-free identification of up to 1,300 proteins from a single cell in a single run using an Orbitrap Fusion Lumos Mass Spectrometer coupled to either an Acquity UPLC M-class system or a Vanquish Neo UHPLC system. The developed sample processing workflow is highly reproducible, robust, and applicable to standardized 384- and 1536-well microplates, as well as glass LC vials. We demonstrate the applicability of the method for proteomics of single cells from multiple cell lines, mixed cell suspensions, and glioblastoma tumor spheroids. As additional proof of robustness, we monitored the results of genetic manipulations and the expression of engineered proteins in individual cells. Our cost-effective and robust single-cell proteomics workflow can be transferred to other labs interested in studying cells at the individual cell level.

Indexed as

accessibleautomationcommercially availablelabel-freesingle-cell dispensingsingle-cell proteomicsthermal inkjet

Identifiers

PMID39233922
PMCPMC11371764

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.