Evidence map›Paper›PMID 39232130›Full record

ArticleThe EMBO journal2024

Disordered regions in the IRE1α ER lumenal domain mediate its stress-induced clustering.

Paulina Kettel, Laura Marosits, Elena Spinetti, Michael Rechberger, Caterina Giannini, Philipp Radler, Isabell Niedermoser, Irmgard Fischer, Gijs A Versteeg, Martin Loose and 2 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Paulina Kettel *Max Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria.ORCID http://orcid.org/0000-0002-7165-1367
Laura Marosits *Max Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria.ORCID http://orcid.org/0000-0002-3817-8977
Elena SpinettiFrankfurt Institute for Advanced Studies, Frankfurt, Germany.ORCID http://orcid.org/0009-0009-1831-7480
Michael RechbergerMax Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria.ORCID http://orcid.org/0009-0003-9040-6855
Caterina GianniniInstitute of Science and Technology Austria, Klosterneuburg, Austria.ORCID http://orcid.org/0009-0004-4807-3812
Philipp RadlerInstitute of Science and Technology Austria, Klosterneuburg, Austria.
Isabell NiedermoserMax Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria.ORCID http://orcid.org/0000-0002-5301-3361
Irmgard FischerMax Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria.
Gijs A VersteegMax Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria.ORCID http://orcid.org/0000-0002-6150-2165
Martin LooseInstitute of Science and Technology Austria, Klosterneuburg, Austria.
Roberto CovinoFrankfurt Institute for Advanced Studies, Frankfurt, Germany.
G Elif KaragözMax Perutz Laboratories Vienna, Vienna BioCenter, Vienna, Austria. guelsuen.karagoez@meduniwien.ac.at.ORCID http://orcid.org/0000-0002-3392-2250

Funding

Austrian Science Fund (FWF) FWF-SFB F79Austrian Science Fund (FWF) FWF-W 1261Austrian Science Fund (FWF) P30231-B,P30415-B,P36572Austrian Science Fund (FWF) SFB grant F79Deutsche Forschungsgemeinschaft (DFG) 450648163Deutsche Forschungsgemeinschaft (DFG) SFB 1507European Regional Development Fund-Project, UP CIISB, CZ.02.1.01/0.0/0.0/18_046/0015974Frankfurt Institute of Advanced Studies N/AInternational Max Planck Research School on Cellular Biophysics LM2023042The LOEWE Center for Multiscale Modelling in Life Sciences of the state of Hesse N/A
6 · The paper itself

Abstract

Conserved signaling cascades monitor protein-folding homeostasis to ensure proper cellular function. One of the evolutionary conserved key players is IRE1, which maintains endoplasmic reticulum (ER) homeostasis through the unfolded protein response (UPR). Upon accumulation of misfolded proteins in the ER, IRE1 forms clusters on the ER membrane to initiate UPR signaling. What regulates IRE1 cluster formation is not fully understood. Here, we show that the ER lumenal domain (LD) of human IRE1α forms biomolecular condensates in vitro. IRE1α LD condensates were stabilized both by binding to unfolded polypeptides as well as by tethering to model membranes, suggesting their role in assembling IRE1α into signaling-competent stable clusters. Molecular dynamics simulations indicated that weak multivalent interactions drive IRE1α LD clustering. Mutagenesis experiments identified disordered regions in IRE1α LD to control its clustering in vitro and in cells. Importantly, dysregulated clustering of IRE1α mutants led to defects in IRE1α signaling. Our results revealed that disordered regions in IRE1α LD control its clustering and suggest their role as a common strategy in regulating protein assembly on membranes.

Indexed as

Endoplasmic ReticulumEndoribonucleasesProtein Serine-Threonine KinasesUnfolded Protein ResponseEndoplasmic Reticulum StressHumansMolecular Dynamics SimulationProtein DomainsSignal TransductionEndoribonucleasesERN1 protein, humanProtein Serine-Threonine KinasesBiomolecular CondensatesIRE1Supported Lipid BilayersUnfolded Protein Response

Identifiers

PMID39232130
PMCPMC11480506

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.