Evidence map›Paper›PMID 39232109›Full record

ArticleScientific reports2024

Satellitome analysis on the pale-breasted thrush Turdus leucomelas (Passeriformes; Turdidae) uncovers the putative co-evolution of sex chromosomes and satellite DNAs.

Guilherme Mota Souza, Rafael Kretschmer, Gustavo Akira Toma, Alan Moura de Oliveira, Geize Aparecida Deon, Princia Grejo Setti, Rodrigo Zeni Dos Santos, Caio Augusto Gomes Goes, Analía Del Valle Garnero, Ricardo José Gunski and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Guilherme Mota SouzaDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.
Rafael KretschmerDepartamento de Ecologia, Zoologia e Genética, Instituto de Biologia, Universidade Federal de Pelotas, Pelotas, RS, 96010-610, Brazil.
Gustavo Akira TomaDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.
Alan Moura de OliveiraDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.
Geize Aparecida DeonDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.
Princia Grejo SettiDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.
Rodrigo Zeni Dos SantosFaculdade de Ciências, Universidade Estadual Paulista, Bauru, SP, 17033-360, Brazil.
Caio Augusto Gomes GoesFaculdade de Ciências, Universidade Estadual Paulista, Bauru, SP, 17033-360, Brazil.
Analía Del Valle GarneroUniversidade Federal do Pampa, Campus São Gabriel, São Gabriel, RS, 97307-020, Brazil.
Ricardo José GunskiUniversidade Federal do Pampa, Campus São Gabriel, São Gabriel, RS, 97307-020, Brazil.
Edivaldo Herculano Correa de OliveiraSeção de Meio Ambiente, Instituto Evandro Chagas, Ananindeua, PA, 67030-000, Brazil.
Fabio Porto-ForestiFaculdade de Ciências, Universidade Estadual Paulista, Bauru, SP, 17033-360, Brazil.
Thomas LiehrInstitut für Humangenetik, Universitätsklinikum Jena, Friedrich-Schiller Universität, 07747, Jena, Germany. thomas.liehr@med.uni-jena.de.
Ricardo UtsunomiaFaculdade de Ciências, Universidade Estadual Paulista, Bauru, SP, 17033-360, Brazil.
Marcelo de Bello CioffiDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 302928/2021-9Fundação de Amparo à Pesquisa do Estado de São Paulo 2022/14584-3Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul 22/2551-0000572-1
6 · The paper itself

Abstract

Do all birds' sex chromosomes follow the same canonical one-way direction of evolution? We combined cytogenetic and genomic approaches to analyze the process of the W chromosomal differentiation in two selected Passeriform species, named the Pale-breasted Thrush Turdus leucomelas and the Rufous-bellied thrush T. rufiventris. We characterized the full catalog of satellite DNAs (satellitome) of T. leucomelas, and the 10 TleSatDNA classes obtained together with 16 microsatellite motifs were in situ mapped in both species. Additionally, using Comparative Genomic Hybridization (CGH) assays, we investigated their intragenomic variations. The W chromosomes of both species did not accumulate higher amounts of both heterochromatin and repetitive sequences. However, while T. leucomelas showed a heterochromatin-poor W chromosome with a very complex evolutionary history, T. rufiventris showed a small and partially heterochromatic W chromosome that represents a differentiated version of its original autosomal complement (Z chromosome). The combined approach of CGH and sequential satDNA mapping suggest the occurrence of a former W-autosomal translocation event in T. leucomelas, which had an impact on the W chromosome in terms of sequence gains and losses. At the same time, an autosome, which is present in both males and females in a polymorphic state, lost sequences and integrated previously W-specific ones. This putative W-autosomal translocation, however, did not result in the emergence of a multiple-sex chromosome system. Instead, the generation of a neo-W chromosome suggests an unexpected evolutionary trajectory that deviates from the standard canonical model of sex chromosome evolution.

Indexed as

DNA, SatelliteEvolution, MolecularHeterochromatinSex ChromosomesAnimalsComparative Genomic HybridizationFemaleIn Situ Hybridization, FluorescenceMaleMicrosatellite RepeatsPasseriformesDNA, SatelliteHeterochromatinEvolutionMolecular cytogeneticsNeo sex chromosomessatDNATranslocation

Identifiers

PMID39232109
PMCPMC11375038

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.