Evidence map›Paper›PMID 39231967›Full record

ArticleNature communications2024

Stable coexistence between an archaeal virus and the dominant methanogen of the human gut.

Diana P Baquero, Sofia Medvedeva, Camille Martin-Gallausiaux, Nika Pende, Anna Sartori-Rupp, Stéphane Tachon, Thierry Pedron, Laurent Debarbieux, Guillaume Borrel, Simonetta Gribaldo and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. The OMMGut microbes · 2026
    Review
  2. Review
  3. Article
  4. Taxonomic revision of the genusInternational journal of systematic and evolutionary microbiology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Frontiers in veterinary science · 2025
    Article
  14. Isolation of aFrontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Diana P BaqueroInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, Paris, France.
Sofia MedvedevaInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Unit Evolutionary Biology of the Microbial Cell, Paris, France.ORCID 0000-0002-7841-0814
Camille Martin-GallausiauxInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Unit Evolutionary Biology of the Microbial Cell, Paris, France.ORCID 0000-0002-6193-4304
Nika PendeInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Unit Evolutionary Biology of the Microbial Cell, Paris, France.ORCID 0000-0001-6986-0090
Anna Sartori-RuppInstitut Pasteur, NanoImaging Core Facility, Centre de Ressources et Recherches Technologiques (C2RT), Paris, France.ORCID 0000-0001-8540-9910
Stéphane TachonInstitut Pasteur, NanoImaging Core Facility, Centre de Ressources et Recherches Technologiques (C2RT), Paris, France.
Thierry PedronInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Bacteriophage Bacterium Host, Paris, France.
Laurent DebarbieuxInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Bacteriophage Bacterium Host, Paris, France.ORCID 0000-0001-6875-5758
Guillaume BorrelInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Unit Evolutionary Biology of the Microbial Cell, Paris, France.ORCID 0000-0003-4893-8180
Simonetta GribaldoInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Unit Evolutionary Biology of the Microbial Cell, Paris, France. simonetta.gribaldo@pasteur.fr.ORCID 0000-0002-7662-021X
Mart KrupovicInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, Paris, France. mart.krupovic@pasteur.fr.ORCID 0000-0001-5486-0098

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-11-EQPX-0008Agence Nationale de la Recherche (French National Research Agency) ANR-20-CE92-0048Agence Nationale de la Recherche (French National Research Agency) ANR-23-CE02-0022Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) Elise Richter Fellowship (FWF project V 931-B)Fondation pour la Recherche Médicale (Foundation for Medical Research in France) Retour en France fellowship
6 · The paper itself

Abstract

The human gut virome, which is mainly composed of bacteriophages, also includes viruses infecting archaea, yet their role remains poorly understood due to lack of isolates. Here, we characterize a temperate archaeal virus (MSTV1) infecting Methanobrevibacter smithii, the dominant methanogenic archaeon of the human gut. The MSTV1 genome is integrated in the host chromosome as a provirus which is sporadically induced, resulting in virion release. Using cryo-electron tomography, we capture several intracellular virion assembly intermediates and confirm that only a small fraction of the host population actively produces virions in vitro. Similar low frequency of induction is observed in a mouse colonization model, using mice harboring a stable consortium of 12 bacterial species (OMM

Indexed as

Archaeal VirusesGastrointestinal MicrobiomeMethanobrevibacterAnimalsFemaleGenome, ViralHumansLysogenyMiceVirion

Identifiers

PMID39231967
PMCPMC11375127

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.