Evidence map›Paper›PMID 39231940›Full record

ArticleNature communications2024

Base excision repair and double strand break repair cooperate to modulate the formation of unrepaired double strand breaks in mouse brain.

Aris A Polyzos, Ana Cheong, Jung Hyun Yoo, Lana Blagec, Sneh M Toprani, Zachary D Nagel, Cynthia T McMurray

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aris A PolyzosDivision of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. aapolyzos@lbl.gov.
Ana CheongDepartment of Environmental Health, John B Little Centre for Radiation Sciences, Harvard T.H. Chan School of Public Health, Boston, MA, USA.ORCID 0000-0001-7510-1429
Jung Hyun YooDivision of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Lana BlagecDivision of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Sneh M TopraniDepartment of Environmental Health, John B Little Centre for Radiation Sciences, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
Zachary D NagelDepartment of Environmental Health, John B Little Centre for Radiation Sciences, Harvard T.H. Chan School of Public Health, Boston, MA, USA.ORCID 0000-0003-2104-2093
Cynthia T McMurrayDivision of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. ctmcmurray@lbl.gov.ORCID 0000-0002-4824-6371

Funding

Chemical FingerprintingR01NS060115 · NINDS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI POLYZOS, ARIS A · 2007 to 2024
$7.7M
Multi-Pathway DNA Repair Capacity Measurements in Lung Cancer Patients and Healthy ControlsU01ES029520 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI CHRISTIANI, DAVID C, ENGELWARD, BEVIN P. · 2018 to 2022
$3.3M
Mismatch Repair and DNA expansionR01GM066359 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MCMURRAY, CYNTHIA THERESE · 2004 to 2011
$2.9M
NIEHS NIH HHS U01 ES029520NIGMS NIH HHS R01 GM066359NINDS NIH HHS R01 NS060115
6 · The paper itself

Abstract

We lack the fundamental information needed to understand how DNA damage in the brain is generated and how it is controlled over a lifetime in the absence of replication check points. To address these questions, here, we integrate cell-type and region-specific features of DNA repair activity in the normal brain. The brain has the same repair proteins as other tissues, but normal, canonical repair activity is unequal and is characterized by high base excision repair (BER) and low double strand break repair (DSBR). The natural imbalance creates conditions where single strand breaks (SSBs) can convert to double strand breaks (DSBs) and reversibly switch between states in response to oxidation both in vivo and in vitro. Our data suggest that, in a normal background of repair, SSBs and DSBs are in an equilibrium which is pushed or pulled by metabolic state. Interconversion of SSB to DSBs provides a physiological check point, which would allow the formation of unrepaired DSBs for productive functions, but would also restrict them from exceeding tolerable limits.

Indexed as

BrainDNA Breaks, Double-StrandedDNA RepairAnimalsDNA Breaks, Single-StrandedExcision RepairFemaleMaleMiceMice, Inbred C57BL

Identifiers

PMID39231940
PMCPMC11375129

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.