Evidence map›Paper›PMID 39231223›Full record

ArticleScience advances2024

Protein NMR assignment by isotope pattern recognition.

Uluk Rasulov, Harrison K Wang, Thibault Viennet, Maxim A Droemer, Srđan Matosin, Sebastian Schindler, Zhen-Yu J Sun, Luca Mureddu, Geerten W Vuister, Scott A Robson and 2 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Virus-Glycan Interactions Studied by Solute NMR.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Uluk RasulovSchool of Chemistry, University of Southampton, University Road, Southampton SO17 1BJ, UK.ORCID 0009-0003-7634-4176
Harrison K WangDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-4275-9472
Thibault ViennetDepartment of Chemistry and iNANO, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark.ORCID 0000-0001-5349-0179
Maxim A DroemerFaculty for Chemistry and Pharmacy, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID 0009-0009-5280-2041
Srđan MatosinDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-0534-2133
Sebastian SchindlerDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0009-0008-6932-8203
Zhen-Yu J SunDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-7527-6026
Luca MuredduDepartment of Molecular and Cell Biology, Institute for Structural and Chemical Biology, University of Leicester, Lancaster Road, Leicester LE1 7HB, UK.ORCID 0000-0002-7008-484X
Geerten W VuisterDepartment of Molecular and Cell Biology, Institute for Structural and Chemical Biology, University of Leicester, Lancaster Road, Leicester LE1 7HB, UK.ORCID 0000-0001-6172-5097
Scott A RobsonDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-0529-0399
Haribabu ArthanariDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-7281-1289
Ilya KuprovSchool of Chemistry, University of Southampton, University Road, Southampton SO17 1BJ, UK.ORCID 0000-0003-0430-2682

Funding

NMR Fingerprinting: Leveraging optimal control pulse design, tailored isotope labeling, and machine learning to study intractable proteinsR01GM136859 · NIGMS · DANA-FARBER CANCER INST · PI ARTHANARI, HARIBABU · 2020 to 2024
$2.4M
NIGMS NIH HHS R01 GM136859
6 · The paper itself

Abstract

The current standard method for amino acid signal identification in protein NMR spectra is sequential assignment using triple-resonance experiments. Good software and elaborate heuristics exist, but the process remains laboriously manual. Machine learning does help, but its training databases need millions of samples that cover all relevant physics and every kind of instrumental artifact. In this communication, we offer a solution to this problem. We propose polyadic decompositions to store millions of simulated three-dimensional NMR spectra, on-the-fly generation of artifacts during training, a probabilistic way to incorporate prior and posterior information, and integration with the industry standard CcpNmr software framework. The resulting neural nets take [

Indexed as

ProteinsAlgorithmsAmino AcidsIsotopesMachine LearningNuclear Magnetic Resonance, BiomolecularSoftwareAmino AcidsIsotopesProteins

Identifiers

PMID39231223
PMCPMC11373586

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.