Evidence map›Paper›PMID 39230867›Full record

ArticleMolecular neurobiology2025

The Use of Identified Hypoxia-related Genes to Generate Models for Predicting the Prognosis of Cerebral Ischemia‒reperfusion Injury and Developing Treatment Strategies.

Kaiwen Sun, Hongwei Li, Yang Dong, Lei Cao, Dongpeng Li, Jinghong Li, Manxia Zhang, Dongming Yan, Bo Yang

Abstract read
In one paragraph

Article in Molecular neurobiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. SPRINFrontiers in neurology · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kaiwen SunThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.ORCID http://orcid.org/0009-0002-1830-2392
Hongwei LiThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Yang DongThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Lei CaoThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Dongpeng LiThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Jinghong LiThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Manxia ZhangThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Dongming YanThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China. mrdmyan@163.com.
Bo YangThe First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China. yangbo96@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cerebral ischemia‒reperfusion injury (CIRI) is a type of secondary brain damage caused by reperfusion after ischemic stroke due to vascular obstruction. In this study, a CIRI diagnostic model was established by identifying hypoxia-related differentially expressed genes (HRDEGs) in patients with CIRI. The ischemia‒reperfusion injury (IRI)-related datasets were downloaded from the Gene Expression Omnibus (GEO) database ( http://www.ncbi.nlm.nih.gov/geo ), and hypoxia-related genes in the Gene Cards database were identified. After the datasets were combined, hypoxia-related differentially expressed genes (HRDEGs) expressed in CIRI patients were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of the HRDEGs were performed using online tools. Gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) were performed with the combined gene dataset. CIRI diagnostic models based on HRDEGs were constructed via least absolute shrinkage and selection operator (LASSO) regression analysis and a support vector machine (SVM) algorithm. The efficacy of the 9 identified hub genes for CIRI diagnosis was evaluated via mRNA‒microRNA (miRNA) interaction, mRNA-RNA-binding protein (RBP) network interaction, immune cell infiltration, and receiver operating characteristic (ROC) curve analyses. We then performed logistic regression analysis and constructed logistic regression models based on the expression of the 9 HRDEGs. We next established a nomogram and calibrated the prediction data. Finally, the clinical utility of the constructed logistic regression model was evaluated via decision curve analysis (DCA). This study revealed 9 critical genes with high diagnostic value, offering new insights into the diagnosis and selection of therapeutic targets for patients with CIRI. : Not applicable.

Indexed as

Brain IschemiaHypoxiaReperfusion InjuryDatabases, GeneticGene Expression ProfilingGene OntologyGene Regulatory NetworksHumansMicroRNAsPrognosisSupport Vector MachineMicroRNAsBioinformaticsCerebral Ischemia‒reperfusion InjuryDiagnostic ModelHypoxia

Identifiers

PMID39230867
PMCPMC11790705

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.