Evidence map›Paper›PMID 39228726›Full record

ArticlemedRxiv : the preprint server for health sciences2025

Testing and Evaluation of Generative Large Language Models in Electronic Health Record Applications: A Systematic Review.

Xinsong Du, Zhengyang Zhou, Yifei Wang, Ya-Wen Chuang, Yiming Li, Richard Yang, Wenyu Zhang, Xinyi Wang, Xinyu Chen, Hao Guan and 4 more

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Xinsong DuDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.ORCID 0000-0003-3713-3264
Zhengyang ZhouDepartment of Computer Science, Brandeis University, Waltham, MA, USA 02453.
Yifei WangDepartment of Computer Science, Brandeis University, Waltham, MA, USA 02453.
Ya-Wen ChuangDivision of Nephrology, Department of Internal Medicine, Taichung Veterans General Hospital, Taichung, Taiwan, 407219.
Yiming LiDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Richard YangDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Wenyu ZhangDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Xinyi WangDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Xinyu ChenDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Hao GuanDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
John LianDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Pengyu HongDepartment of Computer Science, Brandeis University, Waltham, MA, USA 02453.ORCID 0000-0002-3177-2754
David W BatesDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.
Li ZhouDivision of General Internal Medicine and Primary Care, Brigham and Women's Hospital, Boston, MA, USA 02115.

Funding

Leveraging Longitudinal Data and Informatics Technology to Understand the Role of Bilingualism in Cognitive Resilience, Aging and DementiaR01AG080429 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI Michelle L Dossett, HUA XU · 2023 to 2026
$5.5M
Identifying and addressing missingness and bias to enhance discovery from multimodal health dataR01LM014239 · NLM · BRIGHAM AND WOMEN'S HOSPITAL · PI Pengyu Hong, Li Zhou · 2023 to 2026
$1.6M
Clinical Decision Support System for Early Detection of Cognitive Decline Using Electronic Health Records and Deep LearningR44AG081006 · NIA · MELAX TECHNOLOGIES, INC. · PI DU, JINGCHENG, MANION, FRANK J. · 2023 to 2023
$1.1M
NIA NIH HHS R01 AG080429NIA NIH HHS R44 AG081006NLM NIH HHS R01 LM014239
6 · The paper itself

Abstract

Background: The use of generative large language models (LLMs) with electronic health record (EHR) data is rapidly expanding to support clinical and research tasks. This systematic review synthesizes current strategies, challenges, and future directions for adapting and evaluating generative LLMs in EHR analyses and applications. Methods: We followed the PRISMA guidelines to conduct a systematic review of articles from PubMed and Web of Science published between January 1, 2023, and November 9, 2024. Studies were included if they used generative LLMs to analyze real-world EHR data and reported quantitative performance evaluations. Through data extraction, we identified clinical specialties and tasks for each included article, and summarized evaluation methods. Results: Of the 18,735 articles retrieved, 196 met our criteria. Most studies focused on Radiology (26.0%), Oncology (10.7%), and Emergency Medicine (6.6%). Regarding clinical tasks clinical decision support has the most studies of 62.2%, while summarizations and patient communications have the least studies of 5.6% and 5.1% separately. In addition, GPT-4 and ChatGPT were mostly used generative LLMs, which were used in 60.2% and 57.7% of studies, respectively. We identified 22 unique non-NLP metrics and 35 unique NLP metrics. Although NLP metrics have better scalability, none of the metrics were identified as having a strong correlation with gold-standard human evaluations. Conclusion: Our findings highlight the need to evaluate generative LLMs on EHR data across a broader range of clinical specialties and tasks, as well as the urgent need for standardized, scalable, and clinically meaningful evaluation frameworks.

Indexed as

Electronic Health recordsEvaluationLarge Language ModelsNatural Language ProcessingReview

Identifiers

PMID39228726
PMCPMC11370524

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.