Evidence map›Paper›PMID 39226489›Full record

ArticleJournal of clinical oncology : official journal of the American Society of Clinical Oncology2024

Enhancing Precision in Detecting Severe Immune-Related Adverse Events: Comparative Analysis of Large Language Models and International Classification of Disease Codes in Patient Records.

Virginia H Sun, Julius C Heemelaar, Ibrahim Hadzic, Vineet K Raghu, Chia-Yun Wu, Leyre Zubiri, Azin Ghamari, Nicole R LeBoeuf, Osama Abu-Shawer, Kenneth L Kehl and 20 more

Abstract readComparative Study
In one paragraph

Article in Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Large language models for bioinformatics.Quantitative biology (Beijing, China) · 2026
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Observational
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Virginia H SunHarvard Medical School, Boston, MA.ORCID 0000-0003-1387-2994
Julius C HeemelaarHarvard Medical School, Boston, MA.ORCID 0000-0001-6892-5227
Ibrahim HadzicHarvard Medical School, Boston, MA.ORCID 0000-0002-8397-5940
Vineet K RaghuHarvard Medical School, Boston, MA.ORCID 0000-0003-3524-3945
Chia-Yun WuDivision of Hematology and Oncology, Department of Medicine, Massachusetts General Hospital, Boston, MA.
Leyre ZubiriHarvard Medical School, Boston, MA.ORCID 0000-0003-4226-7443
Azin GhamariHarvard Medical School, Boston, MA.
Nicole R LeBoeufHarvard Medical School, Boston, MA.ORCID 0000-0002-8264-834X
Osama Abu-ShawerDepartment of Internal Medicine, Cleveland Clinic, Cleveland, OH.ORCID 0000-0003-3904-2673
Kenneth L KehlHarvard Medical School, Boston, MA.ORCID 0000-0001-5339-9797
Shilpa GroverHarvard Medical School, Boston, MA.ORCID 0000-0001-6268-6843
Prabhsimranjot SinghHarvard Medical School, Boston, MA.
Giselle A Suero-AbreuHarvard Medical School, Boston, MA.ORCID 0000-0002-4274-2761
Jessica WuHarvard Medical School, Boston, MA.ORCID 0009-0002-3611-8492
Ayo S FaladeInternal Medicine Department, Massachusetts General Brigham Salem Hospital, Salem, MA.ORCID 0000-0001-9201-6998
Kelley GrealishDivision of Hematology and Oncology, Department of Medicine, Massachusetts General Hospital, Boston, MA.
Molly F ThomasDivision of Gastroenterology, Oregon Health and Science University, Portland, OR.
Nora HathawayDivision of Hematology and Oncology, Department of Medicine, Massachusetts General Hospital, Boston, MA.ORCID 0009-0009-2428-9367
Benjamin D MedoffHarvard Medical School, Boston, MA.ORCID 0000-0002-2558-0449
Hannah K GilmanHarvard Medical School, Boston, MA.
Alexandra-Chloe VillaniHarvard Medical School, Boston, MA.ORCID 0000-0001-7461-0408
Jor Sam HoHarvard Medical School, Boston, MA.
Meghan J MooradianHarvard Medical School, Boston, MA.ORCID 0000-0002-8289-8015
Meghan E SiseHarvard Medical School, Boston, MA.ORCID 0000-0002-4327-9713
Daniel A ZlotoffHarvard Medical School, Boston, MA.ORCID 0000-0001-9007-7295
Steven M BlumHarvard Medical School, Boston, MA.ORCID 0000-0001-6030-7192
Michael DouganHarvard Medical School, Boston, MA.ORCID 0000-0001-9266-2009
Ryan J SullivanHarvard Medical School, Boston, MA.
Tomas G NeilanHarvard Medical School, Boston, MA.ORCID 0000-0002-1513-8833
Kerry L ReynoldsHarvard Medical School, Boston, MA.ORCID 0000-0002-7793-654X

Funding

Cardiovascular Diseases among Patients with Cancer and Patients living with HIVK24HL150238 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Tomas G Neilan · 2020 to 2026
$883k
Unraveling the Role of PD-1 in CD8+ Tissue-Resident Memory T Cell Homeostasis and Epithelial Damage in Human ColitisK08DK127246 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI Molly Thomas · 2022 to 2026
$864k
NHLBI NIH HHS K24 HL150238NIDDK NIH HHS K08 DK127246
6 · The paper itself

Abstract

purposeCurrent approaches to accurately identify immune-related adverse events (irAEs) in large retrospective studies are limited. Large language models (LLMs) offer a potential solution to this challenge, given their high performance in natural language comprehension tasks. Therefore, we investigated the use of an LLM to identify irAEs among hospitalized patients, comparing its performance with manual adjudication and International Classification of Disease (ICD) codes.

methodsHospital admissions of patients receiving immune checkpoint inhibitor (ICI) therapy at a single institution from February 5, 2011, to September 5, 2023, were individually reviewed and adjudicated for the presence of irAEs. ICD codes and an LLM with retrieval-augmented generation were applied to detect frequent irAEs (ICI-induced colitis, hepatitis, and pneumonitis) and the most fatal irAE (ICI-myocarditis) from electronic health records. The performance between ICD codes and LLM was compared via sensitivity and specificity with an α = .05, relative to the gold standard of manual adjudication. External validation was performed using a data set of hospital admissions from June 1, 2018, to May 31, 2019, from a second institution.

resultsOf the 7,555 admissions for patients on ICI therapy in the initial cohort, 2.0% were adjudicated to be due to ICI-colitis, 1.1% ICI-hepatitis, 0.7% ICI-pneumonitis, and 0.8% ICI-myocarditis. The LLM demonstrated higher sensitivity than ICD codes (94.7%

conclusionLLMs are a useful tool for the detection of irAEs, outperforming ICD codes in sensitivity and adjudication in efficiency.

Indexed as

Immune Checkpoint InhibitorsInternational Classification of DiseasesAgedElectronic Health RecordsFemaleHumansMaleMiddle AgedNatural Language ProcessingNeoplasmsRetrospective StudiesImmune Checkpoint Inhibitors

Identifiers

PMID39226489
PMCPMC11692905

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.