Evidence map›Paper›PMID 39226328›Full record

ArticlePLoS computational biology2024

Applying Super-Resolution and Tomography Concepts to Identify Receptive Field Subunits in the Retina.

Steffen Krüppel, Mohammad H Khani, Helene M Schreyer, Shashwat Sridhar, Varsha Ramakrishna, Sören J Zapp, Matthias Mietsch, Dimokratis Karamanlis, Tim Gollisch

Abstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Steffen KrüppelUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0000-0002-2773-6785
Mohammad H KhaniUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0000-0003-3123-7054
Helene M SchreyerUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.
Shashwat SridharUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0000-0002-8837-8555
Varsha RamakrishnaUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0009-0002-1369-2600
Sören J ZappUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0000-0003-0836-1663
Matthias MietschGerman Primate Center, Laboratory Animal Science Unit, Göttingen, Germany.
Dimokratis KaramanlisUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0000-0002-9469-5020
Tim GollischUniversity Medical Center Göttingen, Department of Ophthalmology, Göttingen, Germany.ORCID 0000-0003-3998-533X

Funding

Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) 390729940Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) 432680300Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) 515774656European Research Council (ERC) 724822
6 · The paper itself

Abstract

Spatially nonlinear stimulus integration by retinal ganglion cells lies at the heart of various computations performed by the retina. It arises from the nonlinear transmission of signals that ganglion cells receive from bipolar cells, which thereby constitute functional subunits within a ganglion cell's receptive field. Inferring these subunits from recorded ganglion cell activity promises a new avenue for studying the functional architecture of the retina. This calls for efficient methods, which leave sufficient experimental time to leverage the acquired knowledge for further investigating identified subunits. Here, we combine concepts from super-resolution microscopy and computed tomography and introduce super-resolved tomographic reconstruction (STR) as a technique to efficiently stimulate and locate receptive field subunits. Simulations demonstrate that this approach can reliably identify subunits across a wide range of model variations, and application in recordings of primate parasol ganglion cells validates the experimental feasibility. STR can potentially reveal comprehensive subunit layouts within only a few tens of minutes of recording time, making it ideal for online analysis and closed-loop investigations of receptive field substructure in retina recordings.

Indexed as

RetinaRetinal Ganglion CellsAnimalsComputational BiologyComputer SimulationModels, NeurologicalTomography, X-Ray Computed

Identifiers

PMID39226328
PMCPMC11398665

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.