Evidence map›Paper›PMID 39223615›Full record

ArticleFungal biology and biotechnology2024

Streptomyces small laccase expressed in Aspergillus Niger as a new addition for the lignocellulose bioconversion toolbox.

Andika Sidar, Gerben P Voshol, Ahmed El-Masoudi, Erik Vijgenboom, Peter J Punt

Abstract read
In one paragraph

Article in Fungal biology and biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andika SidarInstitute of Biology Leiden, Fungal Genetics and Biotechnology, Leiden University, 2333BE, Leiden, The Netherlands. andika.sidar@ugm.ac.id.
Gerben P VosholInstitute of Biology Leiden, Fungal Genetics and Biotechnology, Leiden University, 2333BE, Leiden, The Netherlands.
Ahmed El-MasoudiInstitute of Biology Leiden, Fungal Genetics and Biotechnology, Leiden University, 2333BE, Leiden, The Netherlands.
Erik VijgenboomInstitute of Biology Leiden, Fungal Genetics and Biotechnology, Leiden University, 2333BE, Leiden, The Netherlands.
Peter J PuntInstitute of Biology Leiden, Fungal Genetics and Biotechnology, Leiden University, 2333BE, Leiden, The Netherlands. ppunt@ginkgobioworks.com.

Funding

Dutch National Organization for Scientific Research NWO 053.80.721/EIB.14.021Indonesia Endowment Fund for Education (LPDP) from the Ministry of Finance, Indonesia 20160422026103
6 · The paper itself

Abstract

Laccases are multi-copper oxidases that are usually composed of three Cu-oxidase domains. Domains one and three house the copper binding sites, and the second domain is involved in forming a substrate-binding cleft. However, Streptomyces species are found to have small laccases (SLAC) that lack one of the three Cu-oxidase domains. This type of SLAC with interesting lignocellulose bioconversion activities has not been reported in Aspergillus niger. In our research, we explored the expression and engineering of the SLAC from Streptomyces leeuwenhoekii C34 in A. niger. Genes encoding two versions of the SLAC were expressed. One encoding the SLAC in its native form and a second encoding the SLAC fused to two N-terminal CBM1 domains. The latter is a configuration also known for specific yeast laccases. Both SLAC variants were functionally expressed in A. niger as shown by in vitro activity assays and proteome analysis. Laccase activity was also analyzed toward bioconversion of lignocellulosic rice straw. From this analysis it was clear that the SLAC activity improved the efficiency of saccharification of lignocellulosic biomass by cellulase enzyme cocktails.

Indexed as

Aspergillus NigerCarbohydrate binding moduleLignocellulose degradationProtein-domain engineeringSmall laccaseStreptomyces

Identifiers

PMID39223615
PMCPMC11368006

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.