Evidence map›Paper›PMID 39220707›Full record

ArticleACS central science2024

Structural Basis for Methine Excision by a Heme Oxygenase-like Enzyme.

William C Simke, Morgan E Walker, Logan A Calderone, Andrew T Putz, Jon B Patteson, Caitlin N Vitro, Cynthia F Zizola, Matthew R Redinbo, Maria-Eirini Pandelia, Tyler L Grove and 1 more

Abstract read
In one paragraph

Article in ACS central science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Heme oxygenase-like dimetal oxidases and oxygenases.Biochemical Society transactions · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Heme Oxygenase-Like Metalloenzymes.Annual review of biochemistry · 2025
    Review
  8. Biochemical characterization of the self-sacrificing p-aminobenzoate synthase from Nitrosomonas europaea reveals key residues involved in selecting a Fe/Fe or Mn/Fe cofactor.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2025
    Article
  9. Copper-chelating natural products.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

William C SimkeDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.ORCID https://orcid.org/0000-0003-3016-9969
Morgan E WalkerDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.ORCID https://orcid.org/0000-0002-0234-1939
Logan A CalderoneDepartment of Biochemistry, Brandeis University, 415 South Street, Waltham, Massachusetts 02453, United States.ORCID https://orcid.org/0000-0002-0960-3831
Andrew T PutzDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.
Jon B PattesonDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.ORCID https://orcid.org/0000-0002-5949-7678
Caitlin N VitroDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.
Cynthia F ZizolaDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, United States.
Matthew R RedinboDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.
Maria-Eirini PandeliaDepartment of Biochemistry, Brandeis University, 415 South Street, Waltham, Massachusetts 02453, United States.ORCID https://orcid.org/0000-0002-6750-1948
Tyler L GroveDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, United States.ORCID https://orcid.org/0000-0002-4763-0646
Bo LiDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.ORCID https://orcid.org/0000-0002-8019-8891

Funding

Mining Genomes for Synergistic AntibioticsDP2HD094657 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, BO · 2017 to 2017
$2.3M
Macromolecular Structure, Dynamics, and MechanismT32GM135126 · NIGMS · BRANDEIS UNIVERSITY · PI JEFF GELLES, Douglas Lowell Theobald · 2020 to 2026
$2.1M
How does a metallofactor in Hepatitis B viral protein X orchestrate pathogenesis and liver cancerR01GM126303 · NIGMS · BRANDEIS UNIVERSITY · PI PANDELIA, MARIA-EIRINI · 2019 to 2023
$1.8M
UNC Chemical Biology Interface Training ProgramT32GM135122 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jeffrey Aube · 2021 to 2026
$1.6M
Ultra-high pressure liquid chromatography coupled high resolution mass spectrometerR01GM148685 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, BO · 2022 to 2025
$1.6M
Understanding and Controlling Drug Metabolism by the Gut Microbiota to Improve Human HealthR01GM137286 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI REDINBO, MATTHEW R · 2020 to 2023
$1.2M
Functional diversification of the HD-superfamily; the Hydrolase/Oxygenase DilemmaR00GM111978 · NIGMS · BRANDEIS UNIVERSITY · PI PANDELIA, MARIA-EIRINI · 2016 to 2018
$740k
NICHD NIH HHS DP2 HD094657NIGMS NIH HHS R00 GM111978NIGMS NIH HHS R01 GM126303NIGMS NIH HHS R01 GM137286NIGMS NIH HHS R01 GM148685NIGMS NIH HHS T32 GM135122NIGMS NIH HHS T32 GM135126
6 · The paper itself

Abstract

Heme oxygenase-like domain-containing oxidases (HDOs) are a rapidly expanding enzyme family that typically use dinuclear metal cofactors instead of heme. FlcD, an HDO from the opportunistic pathogen

Identifiers

PMID39220707
PMCPMC11363339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.