Evidence map›Paper›PMID 39217398›Full record

ArticleActa neuropathologica communications2024

Deciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profiling: a case study.

Jie Pan, Jaume Fores-Martos, Claire Delpirou Nouh, Tanner D Jensen, Kristen Vallejo, Romain Cayrol, Saman Ahmadian, Euan A Ashley, Michael D Greicius, Inma Cobos

Erratum issuedAbstract read
In one paragraph

Article in Acta neuropathologica communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Jie PanDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Jaume Fores-MartosDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Claire Delpirou NouhDepartment of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA.
Tanner D JensenDepartment of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA.
Kristen VallejoDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Romain CayrolDepartment of Pathology and Cell Biology, Faculty of Medicine, Université de Montréal, Montreal, QC, Canada.
Saman AhmadianDepartment of Pathology, The Ohio State University Wexner Medical Center, Columbus, OH, USA.
Euan A AshleyDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Michael D Greicius *Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA.
Inma Cobos *Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA. icobos@stanford.edu.ORCID http://orcid.org/0000-0002-2043-1890

Funding

Stanford Alzheimer's Disease Research CenterAdmin Supp: Developing iPSC models for AD and PDP30AG066515 · NIA · STANFORD UNIVERSITY · PI ELIZABETH MORMINO · 2020 to 2026
$29.0M
Illuminating the APOE Locus with Long-Read Sequencing and Targeted GenomicsR35AG072290 · NIA · STANFORD UNIVERSITY · PI GREICIUS, MICHAEL D · 2021 to 2025
$4.6M
Chan Zuckerberg Initiative 199150NIA NIH HHS P30 AG066515NIA NIH HHS R35 AG072290NIH/NIA P30AG066515NIH/NIA R35AG072290
6 · The paper itself

Abstract

CSF1R-related disorder (CSF1R-RD) is a neurodegenerative condition that predominantly affects white matter due to genetic alterations in the CSF1R gene, which is expressed by microglia. We studied an elderly man with a hereditary, progressive dementing disorder of unclear etiology. Standard genetic testing for leukodystrophy and other neurodegenerative conditions was negative. Brain autopsy revealed classic features of adult-onset leukoencephalopathy with axonal spheroids and pigmented glia (ALSP), including confluent white matter degeneration with axonal spheroids and pigmented glial cells in the affected white matter, consistent with CSF1R-RD. Subsequent long-read sequencing identified a novel deletion in CSF1R that was not detectable with short-read exome sequencing. To gain insight into potential mechanisms underlying white matter degeneration in CSF1R-RD, we studied multiple brain regions exhibiting varying degrees of white matter pathology. We found decreased CSF1R transcript and protein across brain regions, including intact white matter. Single nuclear RNA sequencing (snRNAseq) identified two disease-associated microglial cell states: lipid-laden microglia (expressing GPNMB, ATG7, LGALS1, LGALS3) and inflammatory microglia (expressing IL2RA, ATP2C1, FCGBP, VSIR, SESN3), along with a small population of CD44

Indexed as

BrainNeurodegenerative DiseasesNeurogliaReceptors, Granulocyte-Macrophage Colony-Stimulating FactorAgedGene Expression ProfilingHumansLeukoencephalopathiesMaleMicrogliaReceptor, Macrophage Colony-Stimulating FactorTranscriptomeWhite MatterCSF1R protein, humanReceptor, Macrophage Colony-Stimulating FactorReceptors, Granulocyte-Macrophage Colony-Stimulating FactorALSPCSF1RGPNMBHDLSLeukodystrophyMacrophageMicrogliaOligodendrocyteOPC

Identifiers

PMID39217398
PMCPMC11365264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.