Evidence map›Paper›PMID 39217332›Full record

ArticleMolecular cancer2024

Joint single-cell genetic and transcriptomic analysis reveal pre-malignant SCP-like subclones in human neuroblastoma.

Thale K Olsen, Jörg Otte, Shenglin Mei, Bethel Tesfai Embaie, Polina Kameneva, Huaitao Cheng, Teng Gao, Vasilios Zachariadis, Ioanna Tsea, Åsa Björklund and 14 more

Abstract readLetter
In one paragraph

Article in Molecular cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Review
  3. Translational pediatrics · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Restoring mitochondrial quantity and quality to reverse the Warburg effect and drive neuroblastoma differentiation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Transcriptionally distinct malignant neuroblastoma populations show selective response to adavosertib treatment.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Article
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Thale K Olsen *Department of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Jörg Otte *Department of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Shenglin Mei *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, 02115, USA.
Bethel Tesfai EmbaieDepartment of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Polina KamenevaSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Huaitao ChengDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, 171 77, Sweden.
Teng GaoDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, 02115, USA.
Vasilios ZachariadisDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, 171 77, Sweden.
Ioanna TseaDepartment of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Åsa BjörklundNational Bioinformatics Infrastructure Sweden, SciLifeLab, Uppsala University, Uppsala, 752 36, Sweden.
Emil KryukovDepartment of Ophthalmology, Schepens Eye Research Institute of Massachusetts, Eye and Ear, Boston, MA, 02115, USA.
Ziyi HouDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, 02115, USA.
Anna JohanssonNational Bioinformatics Infrastructure Sweden, SciLifeLab, Uppsala University, Uppsala, 752 36, Sweden.
Erik SundströmDepartment of Neurobiology, Care Sciences and Society, Division of Neurogeriatrics, Karolinska Institutet, Stockholm, 171 77, Sweden.
Tommy MartinssonDepartment of Laboratory Medicine, The Sahlgrenska Academy, University of Gothenburg, Sahlgrenska University Hospital, Gothenburg, 413 45, Sweden.
Susanne FranssonDepartment of Laboratory Medicine, The Sahlgrenska Academy, University of Gothenburg, Sahlgrenska University Hospital, Gothenburg, 413 45, Sweden.
Jakob StenmanDepartment of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Shahrzad Shirazi FardDepartment of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
John Inge JohnsenDepartment of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Per KognerDepartment of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden.
Igor AdameykoDepartment of Physiology and Pharmacology, Karolinska Institutet, Stockholm, 171 77, Sweden.
Martin EngeDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, 171 77, Sweden. martin.enge@ki.se.
Peter V Kharchenko *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, 02115, USA. peter.kharchenko@post.harvard.edu.
Ninib Baryawno *Department of Women's and Children's Health, Childhood Cancer Research Unit, Karolinska Institutet, Stockholm, 171 77, Sweden. n.baryawno@ki.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNeuroblastoma (NB) is a heterogeneous embryonal malignancy and the deadliest tumor of infancy. It is a complex disease that can result in diverse clinical outcomes. In some children, tumors regress spontaneously. Others respond well to existing treatments. But for the high-risk group, which constitutes approximately 40% of all patients, the prognosis remains dire despite collaborative efforts in basic and clinical research. While its exact cellular origin is still under debate, NB is assumed to arise from the neural crest cell lineage including multipotent Schwann cell precursors (SCPs), which differentiate into sympatho-adrenal cell states eventually producing chromaffin cells and sympathoblasts.

methodsTo investigate clonal development of neuroblastoma cell states, we performed haplotype-specific analysis of human tumor samples using single-cell multi-omics, including joint DNA/RNA sequencing of sorted single cells (DNTR-seq). Samples were also assessed using immunofluorescence stainings and fluorescence in-situ hybridization (FISH).

resultsBeyond adrenergic tumor cells, we identify subpopulations of aneuploid SCP-like cells, characterized by clonal expansion, whole-chromosome 17 gains, as well as expression programs of proliferation, apoptosis, and a non-immunomodulatory phenotype.

conclusionAneuploid pre-malignant SCP-like cells represent a novel feature of NB. Genetic evidence and tumor phylogeny suggest that these clones and malignant adrenergic populations originate from aneuploidy-prone cells of migrating neural crest or SCP origin, before lineage commitment to sympatho-adrenal cell states. Our findings expand the phenotypic spectrum of NB cell states. Considering the multipotency of SCPs in development, we suggest that the transformation of fetal SCPs may represent one possible mechanism of tumor initiation in NB with chromosome 17 aberrations as a characteristic element.

Indexed as

Gene Expression ProfilingNeuroblastomaSchwann CellsSingle-Cell AnalysisGene Expression Regulation, NeoplasticHumansIn Situ Hybridization, FluorescenceTranscriptomeChildhood cancerClonalityDevelopmentMulti-omicsNeuroblastomaSchwann cell precursorsSingle-cell sequencingTumor evolutionTumor heterogeneity

Identifiers

PMID39217332
PMCPMC11365129

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