Evidence map›Paper›PMID 39217253›Full record

ArticleMolecular psychiatry2025

Fine-mapping the CYP2A6 regional association with nicotine metabolism among African American smokers.

Jennie G Pouget, Haidy Giratallah, Alec W R Langlois, Ahmed El-Boraie, Caryn Lerman, Jo Knight, Lisa Sanderson Cox, Nikki L Nollen, Jasjit S Ahluwalia, Christian Benner and 2 more

Abstract read
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In one paragraph

Article in Molecular psychiatry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Observational
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jennie G PougetCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.
Haidy GiratallahCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.
Alec W R LangloisCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.
Ahmed El-BoraieCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.
Caryn LermanDepartment of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA.
Jo KnightData Science Institute and Medical School, Lancaster University, Lancaster, UK.ORCID 0000-0002-7148-1660
Lisa Sanderson CoxDepartment of Population Health, University of Kansas School of Medicine, Kansas City, KS, USA.
Nikki L NollenDepartment of Population Health, University of Kansas School of Medicine, Kansas City, KS, USA.
Jasjit S AhluwaliaDepartments of Behavioral and Social Sciences and Medicine, Brown University, Providence, RI, USA.
Christian BennerInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.
Meghan J ChenowethCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.
Rachel F TyndaleCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada. r.tyndale@utoronto.ca.ORCID 0000-0003-1297-2053

Funding

Using wearables and EMA to examine the links between cannabis and depressionP20GM130414 · NIGMS · BROWN UNIVERSITY · PI Gabriela López · 2019 to 2026
$22.0M
Neuroscience-based Interventions for Cancer Risk Behavior ChangeR35CA197461 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LERMAN, CARYN · 2015 to 2021
$6.0M
Helping African American Light Smokers QuitR01CA091912 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI COX, LISA SANDERSON · 2001 to 2010
$5.6M
DH | National Institute for Health Research (NIHR) P20GM130414Gouvernement du Canada | Instituts de Recherche en Santé du Canada | CIHR Skin Research Training Centre (Skin Research Training Centre) PJY-159710National Institutes of Health (NIH) DA020830NCI NIH HHS R01 CA091912NCI NIH HHS R35 CA197461NIGMS NIH HHS P20 GM130414
6 · The paper itself

Abstract

The nicotine metabolite ratio (NMR; 3'hydroxycotinine/cotinine) is a stable biomarker for CYP2A6 enzyme activity and nicotine clearance, with demonstrated clinical utility in personalizing smoking cessation treatment. Common genetic variation in the CYP2A6 region is strongly associated with NMR in smokers. Here, we investigated this regional association in more detail. We evaluated the association of CYP2A6 single-nucleotide polymorphisms (SNPs) and * alleles with NMR among African American smokers (N = 953) from two clinical trials of smoking cessation. Stepwise conditional analysis and Bayesian fine-mapping were undertaken. Putative causal variants were incorporated into an existing African ancestry-specific genetic risk score (GRS) for NMR, and the performance of the updated GRS was evaluated in both African American (n = 953) and European ancestry smokers (n = 933) from these clinical trials. Five independent associations with NMR in the CYP2A6 region were identified using stepwise conditional analysis, including the deletion variant CYP2A6*4 (beta = -0.90, p = 1.55 × 10

Indexed as

Cytochrome P-450 CYP2A6NicotineAdultAllelesBayes TheoremBlack or African AmericanCotinineFemaleGenome-Wide Association StudyGenotypeHumansMaleMiddle AgedPolymorphism, Single NucleotideSmokersSmokingCotinineCYP2A6 protein, humanCytochrome P-450 CYP2A6hydroxycotinineNicotine

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.