Evidence map›Paper›PMID 39213479›Full record

ArticleAnalytical chemistry2024

pyMS-Vis, an Open-Source Python Application for Visualizing and Investigating Deconvoluted Top-Down Mass Spectrometric Experiments: A Histone Proteoform Case Study.

James J Pesavento, Megan S Bindra, Udayan Das, Sarah R Rommelfanger, Mowei Zhou, Ljiljana Paša-Tolić, James G Umen

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Analytical chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

James J PesaventoSaint Mary's College of California, Moraga, California 94575, United States.ORCID 0000-0001-6107-3666
Megan S BindraSaint Mary's College of California, Moraga, California 94575, United States.
Udayan DasSaint Mary's College of California, Moraga, California 94575, United States.
Sarah R RommelfangerDonald Danforth Plant Science Center, St. Louis, Missouri 63132, United States.
Mowei ZhouEnvironmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.ORCID 0000-0003-3575-3224
Ljiljana Paša-TolićEnvironmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.
James G UmenDonald Danforth Plant Science Center, St. Louis, Missouri 63132, United States.

Funding

Stochastic hybrid systems approach to uncovering cell-size control mechanisms R01GM126557 · NIGMS · UNIVERSITY OF DELAWARE · PI SINGH, ABHYUDAI · 2017 to 2019
$675k
NIGMS NIH HHS R01 GM126557
6 · The paper itself

Abstract

We report the development of an open-source Python application that provides quantitative and qualitative information from deconvoluted liquid-chromatography top-down mass spectrometry (LC-TDMS) data sets. This simple-to-use program allows users to search masses-of-interest across multiple LC-TDMS runs and provides visualization of their ion intensities and elution characteristics while quantifying their abundances relative to one another. Focusing on proteoform-rich histone proteins from the green microalga

Indexed as

Chlamydomonas reinhardtiiHistonesMass SpectrometrySoftwareChromatography, LiquidHistones

Identifiers

PMID39213479
PMCPMC11411490

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.