Evidence map›Paper›PMID 39209948›Full record

ArticleNature biomedical engineering2024

Low-cost and scalable projected light-sheet microscopy for the high-resolution imaging of cleared tissue and living samples.

Yannan Chen, Shradha Chauhan, Cheng Gong, Hannah Dayton, Cong Xu, Estanislao Daniel De La Cruz, Yu-Young Wesley Tsai, Malika S Datta, Gorazd B Rosoklija, Andrew J Dwork and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biomedical engineering, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
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  16. Machine learning methods for histopathological image analysis: Updates in 2024.Computational and structural biotechnology journal · 2025
    Review
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  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Yannan ChenDepartment of Biological Sciences, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-2959-2885
Shradha ChauhanDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Cheng GongDepartment of Biological Sciences, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-0026-2006
Hannah DaytonDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Cong XuDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.
Estanislao Daniel De La CruzDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Yu-Young Wesley TsaiDepartment of Biological Sciences, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-3690-9609
Malika S DattaDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Gorazd B RosoklijaDepartment of Psychiatry, Columbia University Irving Medical Center, New York State Psychiatric Institute, New York, NY, USA.
Andrew J DworkDepartment of Psychiatry, Columbia University Irving Medical Center, New York State Psychiatric Institute, New York, NY, USA.
J John MannDepartment of Psychiatry, Columbia University Irving Medical Center, New York State Psychiatric Institute, New York, NY, USA.
Maura BoldriniDepartment of Psychiatry, Columbia University Irving Medical Center, New York State Psychiatric Institute, New York, NY, USA.
Kam W LeongDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-8133-4955
Lars E P DietrichDepartment of Biological Sciences, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-2049-1137
Raju TomerDepartment of Biological Sciences, Columbia University, New York, NY, USA. raju.tomer@columbia.edu.ORCID http://orcid.org/0000-0002-4229-2860

Funding

Integration of redox-balancing mechanisms in Pseudomonas aeruginosa biofilmsR01AI103369 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DIETRICH, LARS · 2013 to 2022
$4.1M
Integrated Microphysiological System of Cerebral Organoid and Blood Vessel for Disease Modeling and Neuropsychiatric Drug screeningUH3TR002151 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEONG, KAM W · 2020 to 2022
$3.6M
A comparative approach for decomposing the mammalian brain architectural complexityDP2MH119423 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TOMER, RAJU · 2018 to 2018
$2.4M
Focused Ultrasound-mediated Delivery of Gene-editing Elements to the Brain for Neurodegenerative DisordersUG3NS115598 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEONG, KAM W · 2019 to 2021
$2.3M
Focused Ultrasound-mediated Delivery of Gene-editing Elements to the Brain for Neurodegenerative DisordersUH3NS115598 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEONG, KAM W · 2022 to 2022
$1.6M
Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) R01AI103369NCATS NIH HHS UH3 TR002151NINDS NIH HHS UG3 NS115598NINDS NIH HHS UH3 NS115598U.S. Department of Health & Human Services | NIH | National Center for Advancing Translational Sciences (NCATS) UH3TR002151U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI103369U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) DP2MH119423
6 · The paper itself

Abstract

Light-sheet fluorescence microscopy (LSFM) is a widely used technique for imaging cleared tissue and living samples. However, high-performance LSFM systems are typically expensive and not easily scalable. Here we introduce a low-cost, scalable and versatile LSFM framework, which we named 'projected light-sheet microscopy' (pLSM), with high imaging performance and small device and computational footprints. We characterized the capabilities of pLSM, which repurposes readily available consumer-grade components, optimized optics, over-network control architecture and software-driven light-sheet modulation, by performing high-resolution mapping of cleared mouse brains and of post-mortem pathological human brain samples, and via the molecular phenotyping of brain and blood-vessel organoids derived from human induced pluripotent stem cells. We also report a method that leverages pLSM for the live imaging of the dynamics of sparsely labelled multi-layered bacterial pellicle biofilms at an air-liquid interface. pLSM can make high-resolution LSFM for biomedical applications more accessible, affordable and scalable.

Indexed as

BrainInduced Pluripotent Stem CellsMicroscopy, FluorescenceAnimalsBiofilmsHumansMiceOrganoids

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.