Evidence map›Paper›PMID 39209842›Full record

ArticleNature communications2024

Interdomain-linkers control conformational transitions in the SLC23 elevator transporter UraA.

Benedikt T Kuhn, Jonathan Zöller, Iwan Zimmermann, Tim Gemeinhardt, Dogukan H Özkul, Julian D Langer, Markus A Seeger, Eric R Geertsma

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Benedikt T KuhnInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt am Main, Germany.ORCID 0000-0002-5406-7994
Jonathan ZöllerProteomics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0002-7989-0768
Iwan ZimmermannInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-3476-4749
Tim GemeinhardtInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt am Main, Germany.
Dogukan H ÖzkulInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt am Main, Germany.ORCID 0009-0008-2885-8507
Julian D LangerProteomics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Markus A SeegerInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-1761-8571
Eric R GeertsmaInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt am Main, Germany. geertsma@mpi-cbg.de.ORCID 0000-0002-2789-5444

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) GE2841/1-1Deutsche Forschungsgemeinschaft (German Research Foundation) GE2841/3-1Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 310030_188817
6 · The paper itself

Abstract

Uptake of nucleobases and ascorbate is an essential process in all living organisms mediated by SLC23 transport proteins. These transmembrane carriers operate via the elevator alternating-access mechanism, and are composed of two rigid domains whose relative motion drives transport. The lack of large conformational changes within these domains suggests that the interdomain-linkers act as flexible tethers. Here, we show that interdomain-linkers are not mere tethers, but have a key regulatory role in dictating the conformational space of the transporter and defining the rotation axis of the mobile transport domain. By resolving a wide inward-open conformation of the SLC23 elevator transporter UraA and combining biochemical studies using a synthetic nanobody as conformational probe with hydrogen-deuterium exchange mass spectrometry, we demonstrate that interdomain-linkers control the function of transport proteins by influencing substrate affinity and transport rate. These findings open the possibility to allosterically modulate the activity of elevator proteins by targeting their linkers.

Indexed as

Bacterial ProteinsAscorbic AcidBiological TransportHydrogen Deuterium Exchange-Mass SpectrometryMembrane Transport ProteinsModels, MolecularProtein ConformationProtein DomainsAscorbic AcidBacterial ProteinsMembrane Transport Proteins

Identifiers

PMID39209842
PMCPMC11362169

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.