Evidence map›Paper›PMID 39208560›Full record

ArticleMedical image analysis2024

Metadata-conditioned generative models to synthesize anatomically-plausible 3D brain MRIs.

Wei Peng, Tomas Bosschieter, Jiahong Ouyang, Robert Paul, Edith V Sullivan, Adolf Pfefferbaum, Ehsan Adeli, Qingyu Zhao, Kilian M Pohl

Abstract read
In one paragraph

Article in Medical image analysis, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Integrating Anatomical Priors Into a Causal Diffusion Model.IEEE transactions on medical imaging · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Cycle Diffusion Model for Counterfactual Image Generation.Predictive Intelligence in Medicine. PRIME (Workshop) · 2026
    Article
  6. WASABI: A Metric for Evaluating Morphometric Plausibility of Synthetic Brain MRIs.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2026
    Article
  7. Generating Novel Brain Morphology by Deforming Learned Templates.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2026
    Article
  8. Latent Causal Modeling for 3D Brain MRI Counterfactuals.Deep generative models : 5th MICCAI workshop, DGM4MICCAI 2025, held in conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings. DGM4MICCAI (Workshop) (5th : 2025 : Taejon-si, Korea) · 2026
    Article
  9. Evaluation of 3D Counterfactual Brain MRI Generation.Deep generative models : 5th MICCAI workshop, DGM4MICCAI 2025, held in conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings. DGM4MICCAI (Workshop) (5th : 2025 : Taejon-si, Korea) · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Evaluating the Quality of Brain MRI Generators.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wei PengDepartment of Psychiatry & Behavioral Sciences, Stanford University, Stanford, CA 94305, United States of America.
Tomas BosschieterInstitute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, United States of America.
Jiahong OuyangDepartment of Electrical Engineering, Stanford University, Stanford, CA 94305, United States of America.
Robert PaulMissouri Institute of Mental Health, University of Missouri, St. Louis, MO 63121, United States of America.
Edith V SullivanDepartment of Psychiatry & Behavioral Sciences, Stanford University, Stanford, CA 94305, United States of America.
Adolf PfefferbaumCenter for Health Sciences, SRI International, Menlo Park, CA 94025, United States of America.
Ehsan AdeliDepartment of Psychiatry & Behavioral Sciences, Stanford University, Stanford, CA 94305, United States of America; Department of Computer Science, Stanford University, Stanford, CA 94305, United States of America.
Qingyu ZhaoDepartment of Radiology, Weill Cornell Medicine, New York, NY 10065, United States of America. Electronic address: qiz4006@med.cornell.edu.
Kilian M PohlDepartment of Psychiatry & Behavioral Sciences, Stanford University, Stanford, CA 94305, United States of America; Department of Electrical Engineering, Stanford University, Stanford, CA 94305, United States of America. Electronic address: kpohl@stanford.edu.

Funding

TRACKING HIV INFECTION AND ALCOHOL ABUSE CNS COMORBIDITY WITH NEUROIMAGINGU01AA017347 · NIAAA · SRI INTERNATIONAL · PI PFEFFERBAUM, ADOLF, SULLIVAN, EDITH VIONI · 2007 to 2021
$16.0M
CNS DEFICITS: INTERACTION OF AGE AND ALCOHOLISMR01AA005965 · NIAAA · STANFORD UNIVERSITY · PI PFEFFERBAUM, ADOLF, ZAHR, NATALIE M · 1985 to 2025
$13.0M
NCANDA: Data Analysis Resource - Uploading Legacy Data to NDAU24AA021697 · NIAAA · STANFORD UNIVERSITY · PI Adolf Pfefferbaum, Kilian Maria Pohl · 2016 to 2026
$12.2M
CEREBELLAR STRUCTURE AND FUNCTION IN ALCOHOLISMR01AA010723 · NIAAA · STANFORD UNIVERSITY · PI SULLIVAN, EDITH VIONI, ZAHR, NATALIE M · 1996 to 2025
$8.3M
Machine learning to distinguish HAND from Alzheimer's disease in HIV over age 60R01MH113406 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI POHL, KILIAN MARIA, VALCOUR, VICTOR · 2017 to 2021
$5.5M
Cerebellar Structure and Function in AlcoholismR37AA010723 · NIAAA · STANFORD UNIVERSITY · PI SULLIVAN, EDITH VIONI · 2010 to 2019
$5.4M
Tracking HIV Infection & Alcohol Abuse CNS Comorbidity with NeuroimagingR01AA017347 · NIAAA · SRI INTERNATIONAL · PI Adolf Pfefferbaum · 2022 to 2026
$5.2M
CNS DEFICITS: INTERACTION OF AGE AND ALCOHOLISMR37AA005965 · NIAAA · STANFORD UNIVERSITY · PI PFEFFERBAUM, ADOLF · 1996 to 2005
$4.4M
N-CANDA: DATA ANALYSIS COMPONENTU01AA021697 · NIAAA · SRI INTERNATIONAL · PI PFEFFERBAUM, ADOLF, POHL, KILIAN MARIA · 2012 to 2015
$3.6M
Interpretable Deep Forecasting of Hazardous Substance Use during High SchoolR01DA057567 · NIDA · STANFORD UNIVERSITY · PI Kilian Maria Pohl, Susan F. Tapert · 2022 to 2026
$2.3M
A facial expression-based personalization engine (FPE) for monitoring and modulating real-time effective engagement in cognitive training in older adults at risk for AD/ADRDR33AG084471 · NIA · STANFORD UNIVERSITY · PI Ehsan Adeli, Feng Vankee Lin · 2025 to 2026
$1.1M
Longitudinal Analysis of Diffusion Tensor Imaging to Discover Adolescent Alcohol Use EffectR00AA028840 · NIAAA · WEILL MEDICAL COLL OF CORNELL UNIV · PI Qingyu Zhao · 2024 to 2026
$747k
NIAAA NIH HHS K99 AA028840NIAAA NIH HHS R00 AA028840NIAAA NIH HHS R01 AA005965NIAAA NIH HHS R01 AA010723NIAAA NIH HHS R01 AA017347NIAAA NIH HHS R37 AA005965NIAAA NIH HHS R37 AA010723NIAAA NIH HHS U01 AA017347NIAAA NIH HHS U01 AA021697NIAAA NIH HHS U24 AA021697NIA NIH HHS R33 AG084471NIA NIH HHS R61 AG084471NIDA NIH HHS R01 DA057567NIMH NIH HHS R01 MH113406
6 · The paper itself

Abstract

Recent advances in generative models have paved the way for enhanced generation of natural and medical images, including synthetic brain MRIs. However, the mainstay of current AI research focuses on optimizing synthetic MRIs with respect to visual quality (such as signal-to-noise ratio) while lacking insights into their relevance to neuroscience. To generate high-quality T1-weighted MRIs relevant for neuroscience discovery, we present a two-stage Diffusion Probabilistic Model (called BrainSynth) to synthesize high-resolution MRIs conditionally-dependent on metadata (such as age and sex). We then propose a novel procedure to assess the quality of BrainSynth according to how well its synthetic MRIs capture macrostructural properties of brain regions and how accurately they encode the effects of age and sex. Results indicate that more than half of the brain regions in our synthetic MRIs are anatomically plausible, i.e., the effect size between real and synthetic MRIs is small relative to biological factors such as age and sex. Moreover, the anatomical plausibility varies across cortical regions according to their geometric complexity. As is, the MRIs generated by BrainSynth significantly improve the training of a predictive model to identify accelerated aging effects in an independent study. These results indicate that our model accurately capture the brain's anatomical information and thus could enrich the data of underrepresented samples in a study. The code of BrainSynth will be released as part of the MONAI project at https://github.com/Project-MONAI/GenerativeModels.

Indexed as

Imaging, Three-DimensionalMagnetic Resonance ImagingAdultBrainFemaleHumansMaleMetadataMiddle AgedSignal-To-Noise RatioGenerative modelMetadataNeuroimagingSynthesis

Identifiers

PMID39208560
PMCPMC11416096

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.