Evidence map›Paper›PMID 39207895›Full record

ArticleActa crystallographica. Section D, Structural biology2024

Structural analysis of a ligand-triggered intermolecular disulfide switch in a major latex protein from opium poppy.

Samuel C Carr, Peter J Facchini, Kenneth K S Ng

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Interpol review of forensic drug chemistry, 2022-2025.Forensic science international. Synergy · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Samuel C CarrDepartment of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada.ORCID 0000-0001-7060-5038
Peter J FacchiniDepartment of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada.ORCID 0000-0002-7693-290X
Kenneth K S NgDepartment of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada.ORCID 0000-0001-7280-8445

Funding

Natural Sciences and Engineering Research Council of Canada 05728Natural Sciences and Engineering Research Council of Canada 183573
6 · The paper itself

Abstract

Several proteins from plant pathogenesis-related family 10 (PR10) are highly abundant in the latex of opium poppy and have recently been shown to play diverse and important roles in the biosynthesis of benzylisoquinoline alkaloids (BIAs). The recent determination of the first crystal structures of PR10-10 showed how large conformational changes in a surface loop and adjacent β-strand are coupled to the binding of BIA compounds to the central hydrophobic binding pocket. A more detailed analysis of these conformational changes is now reported to further clarify how ligand binding is coupled to the formation and cleavage of an intermolecular disulfide bond that is only sterically allowed when the BIA binding pocket is empty. To decouple ligand binding from disulfide-bond formation, each of the two highly conserved cysteine residues (Cys59 and Cys155) in PR10-10 was replaced with serine using site-directed mutagenesis. Crystal structures of the Cys59Ser mutant were determined in the presence of papaverine and in the absence of exogenous BIA compounds. A crystal structure of the Cys155Ser mutant was also determined in the absence of exogenous BIA compounds. All three of these crystal structures reveal conformations similar to that of wild-type PR10-10 with bound BIA compounds. In the absence of exogenous BIA compounds, the Cys59Ser and Cys155Ser mutants appear to bind an unidentified ligand or mixture of ligands that was presumably introduced during expression of the proteins in Escherichia coli. The analysis of conformational changes triggered by the binding of BIA compounds suggests a molecular mechanism coupling ligand binding to the disruption of an intermolecular disulfide bond. This mechanism may be involved in the regulation of biosynthetic reactions in plants and possibly other organisms.

Indexed as

DisulfidesLatexPapaverPlant ProteinsBenzylisoquinolinesBinding SitesCrystallography, X-RayLigandsModels, MolecularMutagenesis, Site-DirectedProtein BindingProtein ConformationBenzylisoquinolinesDisulfidesLatexLigandsPlant Proteinsbenzylisoquinoline alkaloid biosynthesisligand-coupled conformational changesopium poppy latexplant specialized metabolismprotein structure and functionX-ray crystallography

Identifiers

PMID39207895
PMCPMC11394122

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.