Evidence map›Paper›PMID 39205274›Full record

ArticleViruses2024

Whole-Genome Analysis of the Influenza A(H1N1)pdm09 Viruses Isolated from Influenza-like Illness Outpatients in Myanmar and Community-Acquired Oseltamivir-Resistant Strains Present from 2015 to 2019.

Irina Chon, Su Mon Kyaw Win, Wint Wint Phyu, Reiko Saito, Yadanar Kyaw, Nay Chi Win, Di Ja Lasham, Htay Htay Tin, Tsutomu Tamura, Teruhime Otoguro and 4 more

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Irina ChonDivision of International Health (Public Health), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.ORCID 0000-0003-1829-0686
Su Mon Kyaw WinInfectious Diseases Research Center of Niigata University in Myanmar (IDRC), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Wint Wint PhyuDepartment of Microbiology, University of Medicine, Magway 04012, Myanmar.
Reiko SaitoDivision of International Health (Public Health), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.ORCID 0000-0002-1554-8226
Yadanar KyawRespiratory Medicine Department, Thingangyun Sanpya General Hospital, Yangon 110-71, Myanmar.
Nay Chi WinInfectious Diseases Research Center of Niigata University in Myanmar (IDRC), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Di Ja LashamInfectious Diseases Research Center of Niigata University in Myanmar (IDRC), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Htay Htay TinUniversity of Medical Technology, Yangon 110-12, Myanmar.
Tsutomu TamuraInfectious Diseases Research Center of Niigata University in Myanmar (IDRC), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Teruhime OtoguroInfectious Diseases Research Center of Niigata University in Myanmar (IDRC), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Keita WagatsumaDivision of International Health (Public Health), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Yuyang SunDivision of International Health (Public Health), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Jiaming LiDivision of International Health (Public Health), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Hisami WatanabeInfectious Diseases Research Center of Niigata University in Myanmar (IDRC), Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.

Funding

Grants-in-Aid for Scientific Research (KAKENHI) by the Japan Society for the Promotion of Science 21K10414Health and Labor Sciences Research Grants, Ministry of Health, Labor and Welfare, Japan H30-Shinkougyousei-Shitei-002, H30-Shinkougyousei-Shitei-004, and 21HA2003Niigata Prefecture Coronavirus Infectious Disease Control Research and Human Resources De-velopment Support Fund grant number not availableThe Japan Initiative for Global Research Network on Infectious Diseases (J-GRID) by the Japan Agency for Medical Research and Development (AMED) 15fm0108009h0001-21wm0125005h0002
6 · The paper itself

Abstract

In this study, we describe the genetic characteristics of influenza A(H1N1)pdm09 strains detected in Myanmar from 2015 to 2019. Whole genomes from 60 A(H1N1)pdm09 virus isolates were amplified using real-time polymerase chain reaction and successfully sequenced using the Illumina iSeq100 platforms. Eight individual phylogenetic trees were retrieved for each segment along with those of the World Health Organization (WHO)-recommended Southern Hemisphere vaccine strains for the respective years. A(H1N1)pdm09 viruses from 2015 were found to belong to clade 6B, those from 2016 to 6B.1, 2017 to 6B.1A, and 2019 to 6B.1A.5a, and were genetically distinct from the Southern Hemisphere vaccine strains for the respective seasons, A/California/7/2009 and A/Michigan/45/2015. We observed one virus with intra-subtype reassortment, collected in the 2015 season. Importantly, three viruses possessed the H275Y substitution in the neuraminidase protein, appearing to be community-acquired without the prior administration of neuraminidase inhibitors. These viruses exhibited highly reduced susceptibility to oseltamivir and peramivir. This study demonstrates the importance of monitoring genetic variations in influenza viruses that will contribute to the selection of global influenza vaccines.

Indexed as

Antiviral AgentsDrug Resistance, ViralGenome, ViralInfluenza A Virus, H1N1 SubtypeInfluenza, HumanNeuraminidaseOseltamivirPhylogenyWhole Genome SequencingCommunity-Acquired InfectionsHumansMyanmarOutpatientsAntiviral AgentsNeuraminidaseOseltamivirantiviral resistancegenetic reassortmentH275Yinfluenza A(H1N1)pdm09neuraminidase inhibitorsnext-generation sequencingwhole-genome analysis

Identifiers

PMID39205274
PMCPMC11360699

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.