Evidence map›Paper›PMID 39205213›Full record

ArticleViruses2024

An ISG15-Based High-Throughput Screening Assay for Identification and Characterization of SARS-CoV-2 Inhibitors Targeting Papain-like Protease.

Subodh Kumar Samrat, Prashant Kumar, Yuchen Liu, Ke Chen, Hyun Lee, Zhong Li, Yin Chen, Hongmin Li

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Subodh Kumar SamratDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.
Prashant KumarDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.
Yuchen LiuDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.
Ke ChenDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.
Hyun LeeDepartment of Pharmaceutical Sciences, College of Pharmacy and Biophysics Core, Research Resources Center, University of Illinois at Chicago, Chicago, IL 60607, USA.ORCID 0000-0003-2570-8120
Zhong LiDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.
Yin ChenDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.
Hongmin LiDepartment of Pharmacology and Toxicology, R Ken Coit College of Pharmacy, The University of Arizona, 1703 E Mabel St, Tucson, AZ 85721, USA.

Funding

SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI George S Watts · 1994 to 2026
$36.7M
High throughput screening assays to identify chemical probes targeting Hectd3, an E3 ubiquitin ligase implicated in multiple sclerosisR01AI161845 · NIAID · UNIVERSITY OF ARIZONA · PI AVRAM, DORINA, LI, HONGMIN · 2021 to 2025
$3.9M
Development of Inhibitors Targeting Flavivirus MethyltransferaseR01AI175435 · NIAID · UNIVERSITY OF ARIZONA · PI HONGMIN LI · 2023 to 2026
$3.1M
High throughput screening of orthosteric inhibitors of flavivirus proteaseR01AI131669 · NIAID · WADSWORTH CENTER · PI LI, HONGMIN · 2018 to 2022
$2.6M
High throughput screening of the Prp8 intein splicing inhibitors for pathogenic fungiR01AI140726 · NIAID · WADSWORTH CENTER · PI LI, HONGMIN · 2019 to 2022
$2.4M
High throughput screening of orthosteric inhibitors of flavivirus proteaseR56AI131669 · NIAID · WADSWORTH CENTER · PI LI, HONGMIN · 2017 to 2017
$524k
Acquisition of a MicroCal PEAQ-ITC AutomatedS10OD034384 · OD · UNIVERSITY OF ARIZONA · PI LI, HONGMIN · 2023 to 2023
$305k
National Institute of Allergy and Infectious Diseases AI175435, AI161845, AI131669 and AI140726NIAID NIH HHS R01 AI131669NIAID NIH HHS R01 AI140726NIAID NIH HHS R01 AI161845NIAID NIH HHS R01 AI175435NIAID NIH HHS R56 AI131669NIEHS NIH HHS P30 ES006694NIH HHS S10 OD034384
6 · The paper itself

Abstract

Emergence of newer variants of SARS-CoV-2 underscores the need for effective antivirals to complement the vaccination program in managing COVID-19. The multi-functional papain-like protease (PLpro) of SARS-CoV-2 is an essential viral protein that not only regulates the viral replication but also modulates the host immune system, making it a promising therapeutic target. To this end, we developed an in vitro interferon stimulating gene 15 (ISG15)-based Förster resonance energy transfer (FRET) assay and screened the National Cancer Institute (NCI) Diversity Set VI compound library, which comprises 1584 small molecules. Subsequently, we assessed the PLpro enzymatic activity in the presence of screened molecules. We identified three potential PLpro inhibitors, namely, NSC338106, 651084, and 679525, with IC

Indexed as

Antiviral AgentsCoronavirus Papain-Like ProteasesCytokinesHigh-Throughput Screening AssaysSARS-CoV-2UbiquitinsCoronavirus 3C ProteasesCOVID-19COVID-19 Drug TreatmentFluorescence Resonance Energy TransferHumansMolecular Docking SimulationProtease InhibitorsAntiviral AgentsCoronavirus 3C ProteasesCoronavirus Papain-Like ProteasesCytokinesISG15 protein, humanpapain-like protease, SARS-CoV-2Protease InhibitorsUbiquitinsFRET assayhigh-throughput screeningISG15PLproSARS-CoV-2

Identifiers

PMID39205213
PMCPMC11359932

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.