Evidence map›Paper›PMID 39205187›Full record

ArticleViruses2024

Identification and Full-Length Sequence Analysis of a Novel Recombinant Goat Astrovirus Genotype in Guangxi, China.

Yulu Zhou, Pengju Xu, Yanhua Huang, Jie Wang, Chang Cui, Yanglin Wang, Yuhang Luo, Xiaoling Wang, Jiang Xie, Fengmei Li and 6 more

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yulu ZhouLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.ORCID 0009-0003-9122-0569
Pengju XuLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Yanhua HuangLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Jie WangLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Chang CuiLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Yanglin WangLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Yuhang LuoLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Xiaoling WangLaboratory for the Prevention and Control of Bovine and Goat Diseases, College of Animal Science and Technology, Guangxi Vocational University of Agriculture, Nanning 530007, China.
Jiang XieLaboratory for the Prevention and Control of Bovine and Goat Diseases, College of Animal Science and Technology, Guangxi Vocational University of Agriculture, Nanning 530007, China.
Fengmei LiLaboratory for the Prevention and Control of Bovine and Goat Diseases, College of Animal Science and Technology, Guangxi Vocational University of Agriculture, Nanning 530007, China.
Zuzhang WeiLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.ORCID 0000-0002-6317-2315
Ying ChenLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Kang OuyangLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.ORCID 0000-0003-2082-2362
Yifeng QinLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.
Yan PanLaboratory for the Prevention and Control of Bovine and Goat Diseases, College of Animal Science and Technology, Guangxi Vocational University of Agriculture, Nanning 530007, China.
Weijian HuangLaboratory of Animal Infectious Diseases and Molecular Immunology, College of Animal Science and Technology, Guangxi University, Nanning 530004, China.

Funding

the Guangxi Agricultural Science and Technology Selffinancing Project in 2022 R&D and Application Demonstration of Key Technologies for Prevention and Control of Bovine and Sheep Diseases Z202228the Guangxi Key R&D Program "Research and Demonstration Application of Key Technologies for the Prevention and Control of Major and Emerging Epidemic Diseases in Cattle and Sheep in Guangxi" 2023AB19020the National Modern Agricultural Industry System Guangxi Cattle and Sheep Industry Innovation Team Construction of China nycytxgxcxtd-202109
6 · The paper itself

Abstract

Astroviruses are single-stranded, positive-sense RNA viruses capable of infecting humans as well as a wide range of mammalian and avian species, with a length of approximately 6.6-7.7 kb. In this study, 139 goat fecal samples collected from the Guangxi province were used for the RT-PCR detection, and two of these were positive for goat astrovirus, with a positivity rate of 1.44% (2/139). The complete genome sequence of an astrovirus strain and the partial genome sequence of a strain astrovirus, named GX WZ 2023 and GX HC 2023, were amplified and sequenced, and their sequence lengths were 6284 nt and 6213 nt, respectively. Among them, the capsid protein of goat astrovirus GX HC 2023 showed the highest amino acid identity of 95.9% with ovine astrovirus GX, which belonged to the MAstV-2 genotype. However, the closest relative of the GX WZ 2023 strain was found to be the caprine astrovirus Sichuan, with a nucleotide sequence identity of 76.8%. The ORF1ab nonstructural protein of this strain showed the highest amino acid identities of 89.2 and 95.8% with the ovine astrovirus S5.1 and caprine astrovirus G5.1 strains, respectively. However, its ORF2 capsid protein has 68.4% amino acid identity with the bovine astrovirus (BAstV) 16 2021 CHN strain and only 21.9-64% amino acid identity with all available strains of goat astrovirus. The GX WZ 2023 strain was recombined with the Chinese (BAstV 16 2021 CHN) and Japanese bovine strains (BAstV JPN 2015) in the ORF2 region. Therefore, the goat astrovirus GX WZ 2023 is proposed as a new member of the family goat astroviridae based on the species classification criteria of the International Committee on Taxonomy of Viruses. These findings enhance our understanding of the prevalence and genetic evolution of goat astrovirus and provide a scientific basis for future studies of these viruses in other animals.

Indexed as

Astroviridae InfectionsGenome, ViralGenotypeGoat DiseasesGoatsMamastrovirusPhylogenyAnimalsAstroviridaeCapsid ProteinsChinaFecesRecombination, GeneticRNA, ViralSequence Analysis, DNASheepCapsid ProteinsRNA, Viralastrovirusesgoatnew strainsrecombination

Identifiers

PMID39205187
PMCPMC11359656

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.