Evidence map›Paper›PMID 39205159›Full record

ArticleViruses2024

Genetic Characterization of African Swine Fever Italian Clusters in the 2022-2023 Epidemic Wave by a Multi-Gene Approach.

Monica Giammarioli, Claudia Torresi, Roberta Biccheri, Cesare Cammà, Maurilia Marcacci, Alessandro Dondo, Elisabetta Razzuoli, Giovanna Fusco, Francesco Casalinuovo, Maria Teresa Scicluna and 10 more

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Monica GiammarioliNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.ORCID 0000-0002-3422-0699
Claudia TorresiNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.ORCID 0000-0002-8830-1611
Roberta BiccheriNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.ORCID 0009-0006-2315-2519
Cesare CammàNational Reference Center for Whole Genome Sequencing of Microbial Pathogens, Database and Bioinformatic Analysis, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", 64100 Teramo, Italy.ORCID 0000-0002-7547-1195
Maurilia MarcacciNational Reference Center for Whole Genome Sequencing of Microbial Pathogens, Database and Bioinformatic Analysis, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", 64100 Teramo, Italy.ORCID 0000-0002-7875-633X
Alessandro DondoIstituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d'Aosta "I. Altara", 10154 Turin, Italy.
Elisabetta RazzuoliIstituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d'Aosta "I. Altara", 10154 Turin, Italy.ORCID 0000-0002-6597-475X
Giovanna FuscoIstituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, 80055 Napoli, Italy.ORCID 0000-0003-3139-7672
Francesco CasalinuovoIstituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, 80055 Napoli, Italy.
Maria Teresa SciclunaIstituto Zooprofilattico Sperimentale del Lazio e della Toscana "M. Aleandri", 00178 Rome, Italy.
Silvia Dei GiudiciIstituto Zooprofilattico Sperimentale della Sardegna "G. Pegreffi", 07100 Sassari, Italy.ORCID 0000-0003-1803-4666
Ana Maria Moreno MartinIstituto Zooprofilattico Sperimentale della Lombardia e della Emilia Romagna "Bruno Ubertini", 25124 Brescia, Italy.ORCID 0000-0002-8497-9708
Elisabetta RossiNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.
Cristina CasciariNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.
Michela PelaNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.
Carmen IscaroNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.ORCID 0000-0001-6641-3762
Carmina GallardoEuropean Union Reference Laboratory for African Swine Fever (EURL), Centro de Investigación en Sanidad Animal (CISA), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Consejo Superior de Investigaciones Científicas (CSIC), Valdeolmos, 28130 Madrid, Spain.ORCID 0000-0003-3293-306X
Gaia MaroccoNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.
Mario OrricoVeterinary Practitioner, 87040 Cosenza, Italy.
Francesco FelizianiNational Reference Laboratory (NRL) for Swine Fever, Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche "Togo Rosati", 06126 Perugia, Italy.ORCID 0000-0002-9131-996X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The first report of African swine fever virus (ASFV) genotype II in Italy in 2022 marked the beginning of a significant invasion in at least eight Italian regions with different infection clusters. In this study, we used the multi-gene approach to investigate the epidemiological associations between ASFV strains causing cases and outbreaks in wild boar and pigs in Italy from January 2022 to the end of 2023. Our results confirm that all the tested ASFV-positive Italian samples belonged to genotype II and show high homology with genotype II ASFV sequences previously collected in Eurasian countries. Molecular characterization revealed the presence of four genetic groups in Italy. The majority of African swine fever (ASF) samples analyzed in the current study (72%) belonged to genetic group 3, which was the most representative in Europe. The results also provide evidence of the prevalence of genetic group 19 (15.9%). In addition, we identified new putative genetic groups, genetic group 25 (9.1%) and genetic group 26 (3.0%), which have never been described before. This is the first detailed report on the molecular characterization of more than 130 ASFV strains circulating in Italy.

Indexed as

African Swine FeverAfrican Swine Fever VirusGenotypePhylogenySus scrofaAnimalsDisease OutbreaksEpidemicsGenetic VariationItalySwineAfrican swine fever virusgenetic groupsgenotype IIItalian clustersmulti-gene approach

Identifiers

PMID39205159
PMCPMC11360507

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.