Evidence map›Paper›PMID 39201654›Full record

ArticleInternational journal of molecular sciences2024

Generic Reporter Sets for Colorimetric Multiplex dPCR Demonstrated with 6-Plex SNP Quantification Panels.

Maximilian Neugebauer, Silvia Calabrese, Sarah Müller, Truong-Tu Truong, Peter Juelg, Nadine Borst, Tobias Hutzenlaub, Eva Dazert, Nikolas Christian Cornelius von Bubnoff, Felix von Stetten and 1 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Maximilian NeugebauerHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.ORCID 0009-0001-2358-2387
Silvia CalabreseHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Sarah MüllerHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Truong-Tu TruongHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Peter JuelgHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Nadine BorstHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.ORCID 0000-0003-1258-3250
Tobias HutzenlaubHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Eva DazertDepartment of Hematology and Oncology, University Hospital of Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538 Lübeck, Germany.ORCID 0000-0002-7292-2261
Nikolas Christian Cornelius von BubnoffDepartment of Hematology and Oncology, University Hospital of Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538 Lübeck, Germany.
Felix von StettenHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Michael LehnertHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.

Funding

German Federation of Industrial Research Associations (AiF) 22486 N
6 · The paper itself

Abstract

Digital PCR (dPCR) is a powerful method for highly sensitive and precise quantification of nucleic acids. However, designing and optimizing new multiplex dPCR assays using target sequence specific probes remains cumbersome, since fluorescent signals must be optimized for every new target panel. As a solution, we established a generic fluorogenic 6-plex reporter set, based on mediator probe technology, that decouples target detection from signal generation. This generic reporter set is compatible with different target panels and thus provides already optimized fluorescence signals from the start of new assay development. Generic reporters showed high population separability in a colorimetric 6-plex mediator probe dPCR, due to their tailored fluorophore and quencher selection. These reporters were further tested using different

Indexed as

ColorimetryPolymorphism, Single NucleotideGTP PhosphohydrolasesHumansMembrane ProteinsMultiplex Polymerase Chain ReactionProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)BRAF protein, humanGTP PhosphohydrolasesKRAS protein, humanMembrane ProteinsNRAS protein, humanProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)assay developmentBRAFcolor compensationdigital PCR (dPCR)fluorophore combinationgeneric reporter setKRASmediator extension assay (MEA)mediator probe PCR (MP PCR)NRASoncogenic mutations

Identifiers

PMID39201654
PMCPMC11355019

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.