Evidence map›Paper›PMID 39200327›Full record

ArticleBiomedicines2024

A General Method to Screen Nanobodies for Cytochrome P450 Enzymes from a Yeast Surface Display Library.

Yudong Sun, Cristian Martinez-Ramos, Eugene Chen, Yoichi Osawa, Haoming Zhang

Abstract read
In one paragraph

Article in Biomedicines, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yudong SunDepartment of Pharmacology, The University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Cristian Martinez-RamosDepartment of Pharmacology, The University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Eugene ChenInternal Medicine, The University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Yoichi OsawaDepartment of Pharmacology, The University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Haoming ZhangDepartment of Pharmacology, The University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-8765-4394

Funding

Using genetics to discover mechanisms of myocardial infarctionR01HL109946 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YUQING Eugene CHEN, Ida Liisa Surakka · 2011 to 2026
$8.9M
P450 and NO Synthase Regulation by Multiprotein ComplexesR01GM077430 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OSAWA, YOICHI, ZHANG, HAOMING · 2006 to 2022
$6.5M
Interdepartmental Training in Pharmacological SciencesT32GM140223 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Lori L. Isom · 2021 to 2026
$3.8M
Browning of perivascular adipose tissue protects against thoracic aortic aneurysmR01HL159871 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHEN, YUQING EUGENE · 2022 to 2025
$2.3M
Heme Insertase machinery for cytochrome P450 NO synthaseR01GM153714 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YOICHI OSAWA · 2025 to 2026
$814k
Structural basis for detoxification of environmental pollutants by native complexes of CYP2B family with its redox partnersR21ES030791 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SU, MIN, ZHANG, HAOMING · 2020 to 2021
$429k
NHLBI NIH HHS R01 HL159871NIEHS NIH HHS R21 ES030791NIGMS NIH HHS R01 GM077430NIGMS NIH HHS R01 GM153714NIGMS NIH HHS T32 GM140223NIH HHS 1R21ES030791-21A1NIH HHS 5R01GM077430-22A1NIH HHS 5R01HL109946-22A1
6 · The paper itself

Abstract

The availability of yeast surface display nanobody (Nb) libraries offers a convenient way to acquire antigen-specific nanobodies that may be useful for protein structure-function studies and/or therapeutic applications, complementary to the conventional method of acquiring nanobodies through immunization in camelids. In this study, we developed a general approach to select nanobodies for cytochrome P450 enzymes from a highly diverse yeast display library. We tested our method on three P450 enzymes including CYP102A1, neuronal nitric oxide synthase (nNOS), and the complex of CYP2B4:POR, using a novel streamlined approach where biotinylated P450s were bound to fluorescent-labeled streptavidin for Nb screening. The Nb-antigen binders were selectively enriched using magnetic-activated cell sorting (MACS) and fluorescence-activated cell sorting (FACS). After two rounds of MACS, the population of positive binders was enriched by >5-fold compared to the naïve library. The subsequent FACS selection, with a gating of 0.1%, identified 634, 270, and 215 positive binders for CYP102A1, nNOS, and CYP2B4:POR, respectively. The positive binders for CYP102A1 were further triaged based on EC

Indexed as

biotinylationCYP102A1nanobodyP450yeast display library

Identifiers

PMID39200327
PMCPMC11351928

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.