Evidence map›Paper›PMID 39198572›Full record

ArticleNature ecology & evolution2024

Plasmid-encoded insertion sequences promote rapid adaptation in clinical enterobacteria.

Jorge Sastre-Dominguez, Javier DelaFuente, Laura Toribio-Celestino, Cristina Herencias, Pedro Herrador-Gómez, Coloma Costas, Marta Hernández-García, Rafael Cantón, Jerónimo Rodríguez-Beltrán, Alfonso Santos-Lopez and 1 more

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. ISEmerging microbes & infections · 2026
    Article
  2. Loss of O-antigen due toScience advances · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Plasmid mutation rates scale with copy number.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. The extended mobility of plasmids.Nucleic acids research · 2025
    Review
  16. mBio · 2025
    Article
  17. Article
  18. Article
  19. Phenotypic and genetic heterogeneity ofMicrobial genomics · 2025
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Jorge Sastre-DominguezCentro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.ORCID http://orcid.org/0000-0001-9585-6765
Javier DelaFuenteCentro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.ORCID http://orcid.org/0000-0002-8844-9704
Laura Toribio-CelestinoCentro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.ORCID http://orcid.org/0000-0002-8848-1691
Cristina HerenciasServicio de Microbiología, Hospital Universitario Ramón y Cajal-Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.
Pedro Herrador-GómezCentro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Coloma CostasCentro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Marta Hernández-GarcíaServicio de Microbiología, Hospital Universitario Ramón y Cajal-Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.
Rafael CantónServicio de Microbiología, Hospital Universitario Ramón y Cajal-Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0003-1675-3173
Jerónimo Rodríguez-BeltránServicio de Microbiología, Hospital Universitario Ramón y Cajal-Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0003-3014-1229
Alfonso Santos-Lopez *Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain. alfonsosantos2.as@gmail.com.ORCID http://orcid.org/0000-0002-9163-9947
Alvaro San Millan *Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain. asanmillan@cnb.csic.es.ORCID http://orcid.org/0000-0001-8544-0387

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 101077809-HorizonGTEC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 757440-PLASREVOLUTIONEC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 895671-REPLAYEuropean Research Council 757440European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Research Grant 2022"la Caixa" Foundation (Caixa Foundation) LCF/BQ/PR22/11920001Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III) CD21/00115Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III) CP20/00154Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III) PI19/00749Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III) PI21/01363Ministry of Economy and Competitiveness | Instituto de Salud Carlos III (Institute of Health Carlos III) PI23/01945
6 · The paper itself

Abstract

Plasmids are extrachromosomal genetic elements commonly found in bacteria. They are known to fuel bacterial evolution through horizontal gene transfer, and recent analyses indicate that they can also promote intragenomic adaptations. However, the role of plasmids as catalysts of bacterial evolution beyond horizontal gene transfer is poorly explored. In this study, we investigated the impact of a widespread conjugative plasmid, pOXA-48, on the evolution of several multidrug-resistant clinical enterobacteria. Combining experimental and within-patient evolution analyses, we unveiled that plasmid pOXA-48 promotes bacterial evolution through the transposition of plasmid-encoded insertion sequence 1 (IS1) elements. Specifically, IS1-mediated gene inactivation expedites the adaptation rate of clinical strains in vitro and fosters within-patient adaptation in the gut microbiota. We deciphered the mechanism underlying the plasmid-mediated surge in IS1 transposition, revealing a negative feedback loop regulated by the genomic copy number of IS1. Given the overrepresentation of IS elements in bacterial plasmids, our findings suggest that plasmid-mediated IS1 transposition represents a crucial mechanism for swift bacterial adaptation.

Indexed as

DNA Transposable ElementsEnterobacteriaceaePlasmidsAdaptation, PhysiologicalEnterobacteriaceae InfectionsGene Transfer, HorizontalHumansDNA Transposable Elements

Identifiers

PMID39198572
PMCPMC7616626

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.