Evidence map›Paper›PMID 39198281›Full record

ArticleMicrobial ecology2024

Mating Assay: Plating Below a Cell Density Threshold is Required for Unbiased Estimation of Plasmid Conjugation Frequency of RP4 Transfer Between E. coli Strains.

Zhiming He, Barth F Smets, Arnaud Dechesne

Abstract read
In one paragraph

Article in Microbial ecology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Zhiming HeDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads Building 221, 2800, Kgs. Lyngby, Denmark. zhihe@dtu.dk.ORCID http://orcid.org/0000-0002-6011-3838
Barth F SmetsDepartment of Biological and Chemical Engineering - Environmental Engineering, Aarhus University, Ole Worms Allé 3, 8000, Aarhus C, Denmark.ORCID http://orcid.org/0000-0003-4119-6292
Arnaud DechesneDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads Building 221, 2800, Kgs. Lyngby, Denmark. arde@dtu.dk.ORCID http://orcid.org/0000-0002-6638-2158

Funding

Innovationsfonden 0236-00022BSino-Danish Center PhD Scholarship
6 · The paper itself

Abstract

Mating assays are common laboratory experiments for measuring the conjugation frequency, i.e. efficiency at which a plasmid transfers from a population of donor cells to a population of recipient cells. Selective plating remains a widely used quantification method to enumerate transconjugants at the end of such assays. However, conjugation frequencies may be inaccurately estimated because plasmid transfer can occur on transconjugant-selective plates rather than only during the intended mating duration. We investigated the influence of cell density on this phenomenon. We conducted mating experiments with IncPα plasmid RP4 harbored in Escherichia coli at a fixed cell density and mating conditions, inoculated a serial dilution of the mating mixture on transconjugant-selective plates or in transconjugant-selective broth, and compared the results to a model of cell-to-cell distance distribution. Our findings suggest that irrespective of the mating mode (liquid vs solid), the enumeration of transconjugants becomes significantly biased if the plated cell density exceeds 28 Colony Forming Unit (CFU)/mm

Indexed as

Conjugation, GeneticEscherichia coliPlasmidsGene Transfer, HorizontalConjugationEnumerationGuidelinePlasmidPlate countingSelective plating

Identifiers

PMID39198281
PMCPMC11358341

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.