Evidence map›Paper›PMID 39196622›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Oncofetal IGF2BP3-mediated control of microRNA structural diversity in the malignancy of early-stage lung adenocarcinoma.

Yuko Fujiwara, Ryou-U Takahashi, Motonobu Saito, Michinobu Umakoshi, Yoko Shimada, Kei Koyama, Yasushi Yatabe, Shun-Ichi Watanabe, Souichi Koyota, Yoshihiro Minamiya and 6 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yuko FujiwaraLaboratory of Molecular Carcinogenesis, National Cancer Center Research Institute, Tokyo 104-0045, Japan.ORCID 0009-0008-0142-3968
Ryou-U TakahashiDepartment of Cellular and Molecular Biology, Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima 734-8553, Japan.ORCID 0000-0002-9192-2929
Motonobu SaitoDepartment of Gastrointestinal Tract Surgery, Fukushima Medical University School of Medicine, Fukushima 960-1295, Japan.
Michinobu UmakoshiDepartment of Cellular and Organ Pathology, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.
Yoko ShimadaDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Kei KoyamaDepartment of Cellular and Organ Pathology, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.
Yasushi YatabeDepartment of Diagnostic Pathology, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Shun-Ichi WatanabeDepartment of Thoracic Surgery, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Souichi KoyotaMolecular Medicine Laboratory, Bioscience Education and Research Support Center, Akita University, Akita 010-8543, Japan.
Yoshihiro MinamiyaDepartment of Thoracic Surgery, Akita University Hospital, Akita 010-8543, Japan.
Hidetoshi TaharaDepartment of Cellular and Molecular Biology, Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima 734-8553, Japan.
Koji KonoDepartment of Gastrointestinal Tract Surgery, Fukushima Medical University School of Medicine, Fukushima 960-1295, Japan.
Kouya ShiraishiDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.ORCID 0000-0002-5821-7400
Takashi KohnoDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Akiteru GotoDepartment of Cellular and Organ Pathology, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.ORCID 0000-0001-8776-9004
Naoto TsuchiyaLaboratory of Molecular Carcinogenesis, National Cancer Center Research Institute, Tokyo 104-0045, Japan.

Funding

Japan Agency for Medical Research and Development (AMED) JP23ck0106645h0003Japan Agency for Medical Research and Development (AMED) JP23ck0106824h0001MEXT | Japan Society for the Promotion of Science (JSPS) 18H02703MEXT | Japan Society for the Promotion of Science (JSPS) IP22H04922 (AdAMS)
6 · The paper itself

Abstract

The nature of microRNA (miRNA) dysfunction in carcinogenesis remains controversial because of the complex connection between miRNA structural diversity and biological processes. Here, we found that oncofetal IGF2BP3 regulates the selective production of a subset of 3'-isoforms (3'-isomiRs), including miR-21-5p and Let-7 family, which induces significant changes in their cellular seed occupancy and structural components, establishing a cancer-specific gene expression profile. The D-score, reflecting dominant production of a representative miR-21-5p+C (a 3'-isomiR), discriminated between clinical early-stage lung adenocarcinoma (LUAD) cases with low and high recurrence risks, and was associated with molecular features of cell cycle progression, epithelial-mesenchymal transition pressure, and immune evasion. We found that IGF2BP3 controls the production of miR-21-5p+C by directing the nuclear Drosha complex to select the cleavage site. IGF2BP3 was also involved in the production of 3'-isomiRs of miR-425-5p and miR-454-3p. IGF2BP3-regulated these three miRNAs are suggested to be associated with the regulation of p53, TGF-β, and TNF pathways in LUAD. Knockdown of

Indexed as

Adenocarcinoma of LungGene Expression Regulation, NeoplasticLung NeoplasmsMicroRNAsRNA-Binding ProteinsCell Line, TumorEpithelial-Mesenchymal TransitionHumansRibonuclease IIIDROSHA protein, humanIGF2BP3 protein, humanMicroRNAsMIRN21 microRNA, humanmirnlet7 microRNA, humanRibonuclease IIIRNA-Binding Proteinsearly-stage lung adenocarcinomamiRNA isoform organizationoncofetal IGF2BP3predictive biomarker

Identifiers

PMID39196622
PMCPMC11388381

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.