Evidence map›Paper›PMID 39196112›Full record

ArticleNature cardiovascular research2024

A genome-wide CRISPR screen identifies BRD4 as a regulator of cardiomyocyte differentiation.

Arun Padmanabhan, T Yvanka de Soysa, Angelo Pelonero, Valerie Sapp, Parisha P Shah, Qiaohong Wang, Li Li, Clara Youngna Lee, Nandhini Sadagopan, Tomohiro Nishino and 13 more

Abstract read
In one paragraph

Article in Nature cardiovascular research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Cell Type-Specific Roles for BRD4 in Heart Failure.Current cardiology reports · 2026
    Review
  2. Article
  3. CRISPR and the Future of Cardiac Disease Therapy: A New Genetic Frontier.International journal of molecular sciences · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
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  10. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Arun PadmanabhanGladstone Institutes, San Francisco, CA, USA. arun.padmanabhan@gladstone.ucsf.edu.ORCID 0000-0002-6806-3046
T Yvanka de SoysaGladstone Institutes, San Francisco, CA, USA.
Angelo PeloneroGladstone Institutes, San Francisco, CA, USA.ORCID 0000-0002-7684-3771
Valerie SappDepartment of Medicine, University of California, San Diego, School of Medicine, San Diego, CA, USA.
Parisha P ShahCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Qiaohong WangCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Li LiCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Clara Youngna LeeGladstone Institutes, San Francisco, CA, USA.
Nandhini SadagopanGladstone Institutes, San Francisco, CA, USA.
Tomohiro NishinoGladstone Institutes, San Francisco, CA, USA.ORCID 0000-0002-3593-7368
Lin YeGladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-7351-8685
Rachel YangCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ashley KarnayCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Andrey PoleshkoDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-6656-2941
Nikhita BolarCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ricardo Linares-SaldanaCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Sanjeev S RanadeGladstone Institutes, San Francisco, CA, USA.
Michael AlexanianGladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-6224-6354
Sarah U MortonDivision of Newborn Medicine, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0002-7816-2646
Mohit JainDepartment of Medicine, University of California, San Diego, School of Medicine, San Diego, CA, USA.
Saptarsi M HaldarGladstone Institutes, San Francisco, CA, USA.
Deepak SrivastavaGladstone Institutes, San Francisco, CA, USA. deepak.srivastava@gladstone.ucsf.edu.ORCID 0000-0002-3480-5953
Rajan JainCardiovascular Institute, Epigenetics Institute, and Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. jainr@pennmedicine.upenn.edu.ORCID 0000-0002-1979-044X

Funding

CARDIOGENESIS--MOLECULAR MECHANISMSR01HL057181 · NHLBI · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI DEEPAK SRIVASTAVA · 1997 to 2026
$14.0M
Project 3: Control of cardiac transcription by MEF2 and myocardinP01HL146366 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI CONKLIN, BRUCE R · 2019 to 2023
$13.7M
Regulation of Chromatin Signaling in Heart Failure by the BRD4 Bromodomain Protein.R01HL127240 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MCKINSEY, TIMOTHY, SRIVASTAVA, DEEPAK · 2015 to 2022
$6.4M
Deciphering how 3D genome organization orchestrates cardiac cellular identityR35HL166663 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI Rajan Jain · 2023 to 2026
$3.5M
The Role of BRD4 in Cardiac SpecificationR01HL139783 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI JAIN, RAJAN · 2019 to 2022
$1.6M
Padmanabhan K08 Admin SupplementK08HL157700 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PADMANABHAN, ARUN · 2021 to 2025
$830k
National Impact of IT Investments on Hospital QualityR01HS015100 · AHRQ · UNIVERSITY OF MINNESOTA · PI PARENTE, STEPHEN T · 2008 to 2009
$298k
Defining the role of HOPX and genome-nuclear lamina interactions in cardiomyocyte commitmentF31HL147416 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LINARES SALDANA, RICARDO · 2019 to 2021
$111k
AHRQ HHS R01 HS015100NHLBI NIH HHS F31 HL147416NHLBI NIH HHS K08 HL157700NHLBI NIH HHS P01 HL146366NHLBI NIH HHS R01 HL057181NHLBI NIH HHS R01 HL127240NHLBI NIH HHS R01 HL139783NHLBI NIH HHS R35 HL166663U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) K08HL157700U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01 HL015100
6 · The paper itself

Abstract

Human induced pluripotent stem cell (hiPSC) to cardiomyocyte (CM) differentiation has reshaped approaches to studying cardiac development and disease. In this study, we employed a genome-wide CRISPR screen in a hiPSC to CM differentiation system and reveal here that BRD4, a member of the bromodomain and extraterminal (BET) family, regulates CM differentiation. Chemical inhibition of BET proteins in mouse embryonic stem cell (mESC)-derived or hiPSC-derived cardiac progenitor cells (CPCs) results in decreased CM differentiation and persistence of cells expressing progenitor markers. In vivo, BRD4 deletion in second heart field (SHF) CPCs results in embryonic or early postnatal lethality, with mutants demonstrating myocardial hypoplasia and an increase in CPCs. Single-cell transcriptomics identified a subpopulation of SHF CPCs that is sensitive to BRD4 loss and associated with attenuated CM lineage-specific gene programs. These results highlight a previously unrecognized role for BRD4 in CM fate determination during development and a heterogenous requirement for BRD4 among SHF CPCs.

Indexed as

Cell DifferentiationCRISPR-Cas SystemsInduced Pluripotent Stem CellsMyocytes, CardiacTranscription FactorsAnimalsBromodomain Containing ProteinsCell Cycle ProteinsCell LineageCells, CulturedGene Expression Regulation, DevelopmentalHumansMiceMouse Embryonic Stem CellsNuclear ProteinsSingle-Cell AnalysisBRD4 protein, humanBrd4 protein, mouseBromodomain Containing ProteinsCell Cycle ProteinsNuclear ProteinsTranscription Factors

Identifiers

PMID39196112
PMCPMC11361716

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.