Evidence map›Paper›PMID 39196062›Full record

ArticleNature cardiovascular research2023

Loss-of-function mutations in Dnmt3a and Tet2 lead to accelerated atherosclerosis and concordant macrophage phenotypes.

Philipp J Rauch, Jayakrishnan Gopakumar, Alexander J Silver, Daniel Nachun, Herra Ahmad, Marie McConkey, Tetsushi Nakao, Marc Bosse, Thiago Rentz, Nora Vivanco Gonzalez and 17 more

Abstract read
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In one paragraph

Article in Nature cardiovascular research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Exercise intensity and training alter the innate immune cell type and chromosomal origins of circulating cell-free DNA in humans.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  6. medRxiv : the preprint server for health sciences · 2026
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24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Philipp J Rauch *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. philipp_rauch@dfci.harvard.edu.ORCID 0000-0001-8677-0986
Jayakrishnan Gopakumar *Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-3895-8188
Alexander J SilverDivision of Hematology, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0001-8255-3140
Daniel NachunDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Herra AhmadDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-1871-9614
Marie McConkeyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Tetsushi NakaoDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0001-9979-2682
Marc BosseDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-4912-8059
Thiago RentzCardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Nora Vivanco GonzalezDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Noah F GreenwaldDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-7836-4379
Erin F McCaffreyDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Zumana KhairDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Manu GopakumarDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Kameron B RodriguesDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-0270-3688
Amy E LinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Eti SinhaDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-4680-0321
Maia FeferCardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Drew N CohenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Amélie VrommanCardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Eugenia ShvartzCardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Galina SukhovaCardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Sean BendallDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Michael AngeloDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-1531-5067
Peter LibbyCardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-1502-502X
Benjamin L EbertDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-0197-5451
Siddhartha JaiswalDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA. sjaiswal@stanford.edu.ORCID 0000-0002-9597-0477

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
Stanford Cancer Immune Monitoring and Analysis Center (CIMAC)U24CA224309 · NCI · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Holden T. Maecker · 2017 to 2026
$19.9M
Spatial-Genomic Integrative Multi-Species Analysis of Lymph Node MetastasisU54CA209971 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P, PLEVRITIS, SYLVIA KATINA · 2016 to 2021
$11.0M
Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2017 to 2021
$10.6M
Functional Genomic Dissection of Refractory AnemiaR01HL082945 · NHLBI · DANA-FARBER CANCER INSTITUTE · PI EBERT, BENJAMIN LEVINE · 2005 to 2022
$6.8M
Molecular Determinants of Arterial Remodeling in AtherogenesisR01HL080472 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LIBBY, PETER · 2005 to 2018
$5.0M
MIRIAD - Multiplexed Imaging of Resilience In Alzheimers DiseaseR01AG057915 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$4.5M
Studying macrophage polarization in search for predictive and prognostic markers of breast cancerR01CA229529 · NCI · STANFORD UNIVERSITY · PI Robert michael Angelo, Magdalena Matusiak · 2018 to 2026
$3.9M
The Phenotypic Landscape of Cognitive Decline as Revealed by Next-Generation Multiplexed Ion Beam ImagingR01AG056287 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$2.6M
Mechanisms and Modulation of Accelerated Atherosclerosis in Clonal HematopoiesisR01HL163099 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LIBBY, PETER · 2022 to 2025
$2.6M
Predictive signatures in breast cancer using multiplexed ion beam imagingDP5OD019822 · OD · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL · 2014 to 2018
$2.0M
Uncoupling Age- Versus Cognitive-Related Cellular Senescence in Alzheimer's DiseaseR01AG068279 · NIA · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2020 to 2024
$1.9M
NCI NIH HHS P01 CA066996NCI NIH HHS P50 CA206963NCI NIH HHS R01 CA229529NCI NIH HHS R01 CA240638NCI NIH HHS U24 CA224309NCI NIH HHS U54 CA209971NCI NIH HHS UH3 CA246633NHLBI NIH HHS R01 HL134892NHLBI NIH HHS R01 HL163099NIA NIH HHS R01 AG056287NIA NIH HHS R01 AG057915NIA NIH HHS R01 AG068279NIH HHS DP5 OD019822U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL080472U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL082945
6 · The paper itself

Abstract

Clonal hematopoiesis of indeterminate potential (CHIP) is defined by the presence of a cancer-associated somatic mutation in white blood cells in the absence of overt hematological malignancy. It arises most commonly from loss-of-function mutations in the epigenetic regulators DNMT3A and TET2. CHIP predisposes to both hematological malignancies and atherosclerotic cardiovascular disease in humans. Here we demonstrate that loss of Dnmt3a in myeloid cells increased murine atherosclerosis to a similar degree as previously seen with loss of Tet2. Loss of Dnmt3a enhanced inflammation in macrophages in vitro and generated a distinct adventitial macrophage population in vivo which merges a resident macrophage profile with an inflammatory cytokine signature. These changes surprisingly phenocopy the effect of loss of Tet2. Our results identify a common pathway promoting heightened innate immune cell activation with loss of either gene, providing a biological basis for the excess atherosclerotic disease burden in carriers of these two most prevalent CHIP mutations.

Indexed as

AtherosclerosisDioxygenasesDisease Models, AnimalDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ALoss of Function MutationMacrophagesPhenotypeProto-Oncogene ProteinsAnimalsAortic DiseasesClonal HematopoiesisCytokinesFemaleImmunity, InnateCytokinesDioxygenasesDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADnmt3a protein, mouseInflammation MediatorsProto-Oncogene ProteinsTet2 protein, mouse

Identifiers

PMID39196062

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.