Evidence map›Paper›PMID 39193905›Full record

ArticleNucleic acids research2024

Heterochromatin protein 1 alpha (HP1α) undergoes a monomer to dimer transition that opens and compacts live cell genome architecture.

Jieqiong Lou, Qiji Deng, Xiaomeng Zhang, Charles C Bell, Andrew B Das, Naiara G Bediaga, Courtney O Zlatic, Timothy M Johanson, Rhys S Allan, Michael D W Griffin and 4 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jieqiong LouSchool of Physics, University of Melbourne, Melbourne, VIC 3010, Australia.
Qiji DengPeter MacCallum Cancer Centre, 305 Grattan St, Melbourne, VIC 3000, Australia.
Xiaomeng ZhangSchool of Physics, University of Melbourne, Melbourne, VIC 3010, Australia.
Charles C BellPeter MacCallum Cancer Centre, 305 Grattan St, Melbourne, VIC 3000, Australia.
Andrew B DasPeter MacCallum Cancer Centre, 305 Grattan St, Melbourne, VIC 3000, Australia.
Naiara G BediagaPeter MacCallum Cancer Centre, 305 Grattan St, Melbourne, VIC 3000, Australia.
Courtney O ZlaticDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Melbourne, VIC 3010, Australia.
Timothy M JohansonThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia.
Rhys S AllanThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia.
Michael D W GriffinDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Melbourne, VIC 3010, Australia.
PrasadN ParadkarCSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong3220, Australia.
Kieran F HarveyPeter MacCallum Cancer Centre, 305 Grattan St, Melbourne, VIC 3000, Australia.
Mark A DawsonPeter MacCallum Cancer Centre, 305 Grattan St, Melbourne, VIC 3000, Australia.
Elizabeth HindeSchool of Physics, University of Melbourne, Melbourne, VIC 3010, Australia.ORCID 0000-0001-8317-1152

Funding

ARC Discovery Projects DP180101387ARC Future Fellowship FT200100401Australian Research Council DP220103927Cancer Research Trust New ZealandJacob Haimson Beverly Mecklenburg LectureshipKaye Merlin Brutton BequestNational Health and Medical Research Council 1124081NHMRC Career Development Fellowship 1124762University of Melbourne
6 · The paper itself

Abstract

Our understanding of heterochromatin nanostructure and its capacity to mediate gene silencing in a living cell has been prevented by the diffraction limit of optical microscopy. Thus, here to overcome this technical hurdle, and directly measure the nucleosome arrangement that underpins this dense chromatin state, we coupled fluorescence lifetime imaging microscopy (FLIM) of Förster resonance energy transfer (FRET) between histones core to the nucleosome, with molecular editing of heterochromatin protein 1 alpha (HP1α). Intriguingly, this super-resolved readout of nanoscale chromatin structure, alongside fluorescence fluctuation spectroscopy (FFS) and FLIM-FRET analysis of HP1α protein-protein interaction, revealed nucleosome arrangement to be differentially regulated by HP1α oligomeric state. Specifically, we found HP1α monomers to impart a previously undescribed global nucleosome spacing throughout genome architecture that is mediated by trimethylation on lysine 9 of histone H3 (H3K9me3) and locally reduced upon HP1α dimerisation. Collectively, these results demonstrate HP1α to impart a dual action on chromatin that increases the dynamic range of nucleosome proximity. We anticipate that this finding will have important implications for our understanding of how live cell heterochromatin structure regulates genome function.

Indexed as

Chromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinHistonesNucleosomesProtein MultimerizationChromatinFluorescence Resonance Energy TransferHumansMethylationMicroscopy, FluorescenceCBX5 protein, humanChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinHistonesNucleosomes

Identifiers

PMID39193905
PMCPMC11472067

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.