Evidence map›Paper›PMID 39193893›Full record

ArticleAlzheimer's & dementia : the journal of the Alzheimer's Association2024

Blood DNA methylomic signatures associated with CSF biomarkers of Alzheimer's disease in the EMIF-AD study.

Rebecca G Smith, Ehsan Pishva, Morteza Kouhsar, Jennifer Imm, Valerija Dobricic, Peter Johannsen, Michael Wittig, Andre Franke, Rik Vandenberghe, Jolien Schaeverbeke and 30 more

Abstract read
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Article in Alzheimer's & dementia : the journal of the Alzheimer's Association, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
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  5. Article
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  7. Article
  8. Delineating blood DNA methylation biomarkers for Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  9. Article
  10. Article
  11. A brain DNA co-methylation network analysis of psychosis in Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  12. Blood DNA methylomic signatures associated with CSF biomarkers of Alzheimer's disease in the EMIF-AD study.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Rebecca G SmithDepartment of Clinical and Biomedical Sciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, Devon, UK.
Ehsan PishvaDepartment of Clinical and Biomedical Sciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, Devon, UK.
Morteza KouhsarDepartment of Clinical and Biomedical Sciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, Devon, UK.
Jennifer ImmDepartment of Clinical and Biomedical Sciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, Devon, UK.
Valerija DobricicLübeck Interdisciplinary Platform for Genome Analytics (LIGA), University of Lübeck, Lübeck, Germany.
Peter JohannsenDanish Dementia Research Centre, Rigshospitalet, Copenhagen, Denmark.
Michael WittigInstitute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany.
Andre FrankeInstitute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany.
Rik VandenbergheLaboratory for Cognitive Neurology, KU Leuven, Leuven Brain Institute, Leuven, Belgium.
Jolien SchaeverbekeLaboratory for Cognitive Neurology, KU Leuven, Leuven Brain Institute, Leuven, Belgium.
Yvonne Freund-LeviDepartment of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm, Sweden.
Lutz FrölichDepartment of Geriatric Psychiatry, Central Institut of Mental Health, Medical Faculty Mannheim/Heidelberg University, Mannheim, Germany.
Philip ScheltensAlzheimer Center Amsterdam, Department of Neurology, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.
Charlotte E TeunissenNeurochemistry Laboratory, Department of Laboratory Medicine, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.
Giovanni FrisoniMemory center, Geneva University and University Hospitals; on behalf of the AMYPAD consortium, Geneva, Switzerland.
Olivier BlinAix-Marseille University-CNRS, Marseille, France.
Jill C RichardsonNeuroscience Therapeutic Area, GlaxoSmithKline R&D, Stevenage, Hertfordshire, UK.
Régis BordetUniversité de Lille, Lille, Cedex, France.
Sebastiaan EngelborghsDepartment of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.
Ellen de RoeckDepartment of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.
Pablo Martinez-LageCenter for Research and Advanced Therapies, Fundación CITA-Alzhéimer Fundazioa, San Sebastian, Gipuzkoa, Spain.
Miren AltunaCenter for Research and Advanced Therapies, Fundación CITA-Alzhéimer Fundazioa, San Sebastian, Gipuzkoa, Spain.
Mikel TaintaCenter for Research and Advanced Therapies, Fundación CITA-Alzhéimer Fundazioa, San Sebastian, Gipuzkoa, Spain.
Alberto LleóServicio de Neurología, Centre of Biomedical Investigation Network for Neurodegenerative Diseases (CIBERNED), Hospital Sant Pau, Barcelona, Spain.
Isabel SalaServicio de Neurología, Centre of Biomedical Investigation Network for Neurodegenerative Diseases (CIBERNED), Hospital Sant Pau, Barcelona, Spain.
Julius PoppUniversity Hospital of Psychiatry Zürich, University of Zürich, Zürich, Switzerland.
Gwendoline PeyratoutDepartment of Psychiatry, University Hospital of Lausanne (CHUV), Lausanne, Switzerland.
Laura WinchesterDepartment of Psychiatry, University of Oxford, Oxford, UK.
Alejo Nevado-HolgadoDepartment of Psychiatry, University of Oxford, Oxford, UK.
Frans VerheyDepartment of Psychiatry and Neuropsychology, School for Mental Health and Neuroscience (MHeNs), Faculty of Health, Medicine and Life Sciences (FHML), Maastricht University, Maastricht, The Netherlands.
Magda Tsolaki1st Department of Neurology, School of Medicine, Laboratory of Neurodegenerative Diseases, Center for Interdisciplinary Research and Innovation, Aristotle University of Thessaloniki, and Alzheimer Hellas, Thessaloniki, Greece.
Ulf AndreassonInstitute of Neuroscience and Physiology, Department of Psychiatry and Neurochemistry, The Sahlgrenska Academy at University of Gothenburg, Göteborg, Sweden.
Kaj BlennowInstitute of Neuroscience and Physiology, Department of Psychiatry and Neurochemistry, The Sahlgrenska Academy at University of Gothenburg, Göteborg, Sweden.
Henrik ZetterbergInstitute of Neuroscience and Physiology, Department of Psychiatry and Neurochemistry, The Sahlgrenska Academy at University of Gothenburg, Göteborg, Sweden.
Johannes StrefferTranslational Medicine Neuroscience, UCB Biopharma SRL, Brussels, Belgium.
Stephanie J B VosDepartment of Psychiatry and Neuropsychology, School for Mental Health and Neuroscience (MHeNs), Faculty of Health, Medicine and Life Sciences (FHML), Maastricht University, Maastricht, The Netherlands.
Simon LovestoneDepartment of Psychiatry, University Hospital of Lausanne (CHUV), Lausanne, Switzerland.
Pieter Jelle VisserDepartment of Psychiatry and Neuropsychology, School for Mental Health and Neuroscience (MHeNs), Faculty of Health, Medicine and Life Sciences (FHML), Maastricht University, Maastricht, The Netherlands.
Lars BertramLübeck Interdisciplinary Platform for Genome Analytics (LIGA), University of Lübeck, Lübeck, Germany.
Katie LunnonDepartment of Clinical and Biomedical Sciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, Devon, UK.ORCID 0000-0001-7570-6065

Funding

A multi-omic approach to elucidate novel disease mechanisms and biomarkers for psychosis in Alzheimer’s diseaseR01AG067015 · NIA · UNIVERSITY OF EXETER · PI KOFLER, JULIA K, LUNNON, KATIE · 2019 to 2023
$1.6M
AD Strategic Fund and the Alzheimer's Association #ADSF-21-831376-CAD Strategic Fund and the Alzheimer's Association #ADSF-21-831377-CAD Strategic Fund and the Alzheimer's Association #ADSF-21-831381-CALF-agreement #ALFGBG-715986ALF-agreement #ALFGBG-965240Alzheimer Drug Discovery Foundation #201809-2016862Alzheimer's Association SG-23-1038904 QCAlzheimer's Association 2021 Zenith Award ZEN-21-848495Alzheimer's Society AS-PG-14-038Bluefield ProjectCarlos III Institute Ministry of Health Government of Spain PI12/02262Department of Health of the Basque Government 2016111096Department of Health of the Basque Government S-PR12CH001Department of Health of the Basque Government S-PR13ZH001Erling-Persson Family FoundationEuropean Union Joint Program for Neurodegenerative Disorders JPND2019-466-236European Union Joint Programme-Neurodegenerative Disease Research JPND2021-00694European Union's Horizon 2020 research and innovation programme 860197European Union's Horizon Europe research and innovation programme 101053962European Union's Seventh Framework Program FP7/2007-2013Flemish Government VIND IWT 135043Fonds Wetenschappelijk Onderzoek #12Y1620NGamla Tjänarinnor StftelseHjärnfonden #FO2022-0270Innovative Medicines Initiative Joint Undertaking 115372Medical Research Council (MRC) MR/S011625/1National Institute for Health and Care Research University College London Hospitals Biomedical Research CentreNIA NIH HHS R01 AG067015NIA NIH HHS R01AG067015Olav Thon FoundationStichting Alzheimer Onderzoek #11020Stichting Alzheimer Onderzoek #13007Stichting Alzheimer Onderzoek #2017-032Stiftelsen för Gamla TjänarinnorStohne's FoundationStohnes Stiftelse, Särfond 31S Research Fund Region Örebro län Sweden AFA 200386Swedish Alzheimer Foundation #AF-930351Swedish Alzheimer Foundation #AF-939721Swedish Alzheimer Foundation #AF-968270Swedish government and the County CouncilsSwedish Research Council #2017-00915Swedish Research Council #2019-02397Swedish Research Council #2022-01018Swedish State Support for Clinical Research #ALFGBG-71320Swiss National Research Foundation SNF 320030_141179Swiss National Science Foundation #320030_141179Swiss National Science Foundation 320030_204886Synapsis Foundation-Dementia Research Switzerland #2017-PI01The Brain Foundation FO2018-0315UK Dementia Research Institute UKDRI-1003ZonMw Memorabel/Alzheimer Nederland 733050516
6 · The paper itself

Abstract

introductionWe investigated blood DNA methylation patterns associated with 15 well-established cerebrospinal fluid (CSF) biomarkers of Alzheimer's disease (AD) pathophysiology, neuroinflammation, and neurodegeneration.

methodsWe assessed DNA methylation in 885 blood samples from the European Medical Information Framework for Alzheimer's Disease (EMIF-AD) study using the EPIC array.

resultsWe identified Bonferroni-significant differential methylation associated with CSF YKL-40 (five loci) and neurofilament light chain (NfL; seven loci) levels, with two of the loci associated with CSF YKL-40 levels correlating with plasma YKL-40 levels. A co-localization analysis showed shared genetic variants underlying YKL-40 DNA methylation and CSF protein levels, with evidence that DNA methylation mediates the association between genotype and protein levels. Weighted gene correlation network analysis identified two modules of co-methylated loci correlated with several amyloid measures and enriched in pathways associated with lipoproteins and development. DISCUSSION: We conducted the most comprehensive epigenome-wide association study (EWAS) of AD-relevant CSF biomarkers to date. Future work should explore the relationship between YKL-40 genotype, DNA methylation, and protein levels in the brain. HIGHLIGHTS: Blood DNA methylation was assessed in the EMIF-AD MBD study. Epigenome-wide association studies (EWASs) were performed for 15 Alzheimer's disease (AD)-relevant cerebrospinal fluid (CSF) biomarker measures. Five Bonferroni-significant loci were associated with YKL-40 levels and seven with neurofilament light chain (NfL). DNA methylation in YKL-40 co-localized with previously reported genetic variation. DNA methylation potentially mediates the effect of single-nucleotide polymorphisms (SNPs) in YKL-40 on CSF protein levels.

Indexed as

Alzheimer DiseaseBiomarkersChitinase-3-Like Protein 1DNA MethylationNeurofilament ProteinsAgedFemaleGenome-Wide Association StudyHumansMaleMiddle AgedBiomarkersCHI3L1 protein, humanChitinase-3-Like Protein 1neurofilament protein LNeurofilament ProteinsAlzheimer's disease (AD)amyloidbiomarkerbloodcerebrospinal fluid (CSF)DNA methylationepigeneticsepigenome‐wide association study (EWAS)genome‐wide association study (GWAS)methylation quantitative trait loci (mQTL)mild cognitive impairment (MCI)neurofilament light (NfL)protein quantitative trait loci (pQTL)tauYKL‐40

Identifiers

PMID39193893
PMCPMC11485320

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