Evidence map›Paper›PMID 39192051›Full record

ArticleHuman genetics2024

Integrative genomic analyses identify neuroblastoma risk genes involved in neuronal differentiation.

Matilde Tirelli, Ferdinando Bonfiglio, Sueva Cantalupo, Annalaura Montella, Marianna Avitabile, Teresa Maiorino, Sharon J Diskin, Achille Iolascon, Mario Capasso

Abstract read
In one paragraph

Article in Human genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Matilde TirelliDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Ferdinando BonfiglioDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Sueva CantalupoCEINGE Biotecnologie Avanzate Franco Salvatore, 80145, Naples, Italy.
Annalaura MontellaDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Marianna AvitabileCEINGE Biotecnologie Avanzate Franco Salvatore, 80145, Naples, Italy.
Teresa MaiorinoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Sharon J DiskinDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, 19104, Philadelphia, USA.
Achille IolasconDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Mario CapassoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy. mario.capasso@unina.it.

Funding

Elucidating the role of the noncoding genome in neuroblastomaR01CA237562 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI DISKIN, SHARON · 2021 to 2025
$2.0M
Associazione Italiana per la Ricerca sul Cancro No. 25796NCI NIH HHS R01 CA237562NIH HHS R01-CA237562
6 · The paper itself

Abstract

Genome-Wide Association Studies (GWAS) have been decisive in elucidating the genetic predisposition of neuroblastoma (NB). The majority of genetic variants identified in GWAS are found in non-coding regions, suggesting that they can be causative of pathogenic dysregulations of gene expression. Nonetheless, pinpointing the potential causal genes within implicated genetic loci remains a major challenge. In this study, we integrated NB GWAS and expression Quantitative Trait Loci (eQTL) data from adrenal gland to identify candidate genes impacting NB susceptibility. We found that ZMYM1, CBL, GSKIP and WDR81 expression was dysregulated by NB predisposing variants. We further investigated the functional role of the identified genes through computational analysis of RNA sequencing (RNA-seq) data from single-cell and whole-tissue samples of NB, neural crest, and adrenal gland tissues, as well as through in vitro differentiation assays in NB cell cultures. Our results indicate that dysregulation of ZMYM1, CBL, GSKIP, WDR81 may lead to malignant transformation by affecting early and late stages of normal program of neuronal differentiation. Our findings enhance the understanding of how specific genes contribute to NB pathogenesis by highlighting their influence on neuronal differentiation and emphasizing the impact of genetic risk variants on the regulation of genes involved in critical biological processes.

Indexed as

Cell DifferentiationGenetic Predisposition to DiseaseGenome-Wide Association StudyNeuroblastomaQuantitative Trait LociCell Line, TumorGene Expression Regulation, NeoplasticGenomicsHumansNeuronsPolymorphism, Single Nucleotide

Identifiers

PMID39192051
PMCPMC11522082

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