Evidence map›Paper›PMID 39191249›Full record

ArticleCell chemical biology2024

Engineering acyclovir-induced RNA nanodevices for reversible and tunable control of aptamer function.

Timo Hagen, Jacob L Litke, Nahian Nasir, Qian Hou, Samie R Jaffrey

Abstract read
In one paragraph

Article in Cell chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Timo HagenDepartment of Pharmacology, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA.
Jacob L LitkeDepartment of Pharmacology, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA; Chimerna Therapeutics, New York, NY 10032, USA.
Nahian NasirChimerna Therapeutics, New York, NY 10032, USA.
Qian HouTri-institutional PhD Program in Chemical Biology, Weill Cornell Medical College, The Rockefeller University, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Samie R JaffreyDepartment of Pharmacology, Weill Cornell Medicine, Cornell University, New York, NY 10065, USA; Tri-institutional PhD Program in Chemical Biology, Weill Cornell Medical College, The Rockefeller University, Memorial Sloan Kettering Cancer Center, New York, NY, USA. Electronic address: srj2003@med.cornell.edu.

Funding

New mechanisms and technologies for understanding post-transcriptional gene regulation in neuronsR35NS111631 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI SAMIE R JAFFREY · 2019 to 2026
$8.6M
Circular RNA aptamers to regulate iron homeostasis in iron overload disordersR43DK133031 · NIDDK · CHIMERNA THERAPEUTICS INC. · PI PICKERING, BRIAN FREDERICK · 2022 to 2022
$255k
Ultra-sensitive multi-mode laser-scanning imaging systemS10OD030335 · OD · WEILL MEDICAL COLL OF CORNELL UNIV · PI JAFFREY, SAMIE R · 2021 to 2021
$163k
Engineered circular RNAs: A novel platform for genetically encoded RNA-based biosensors and their application as real-time viral infection reportersF31AI134100 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LITKE, JACOB · 2017 to 2019
$123k
NIAID NIH HHS F31 AI134100NIDDK NIH HHS R43 DK133031NIH HHS S10 OD030335NINDS NIH HHS R35 NS111631
6 · The paper itself

Abstract

Small molecule-regulated RNA devices have the potential to modulate diverse aspects of cellular function, but the small molecules used to date have potential toxicities limiting their use in cells. Here we describe a method for creating drug-regulated RNA nanodevices (RNs) using acyclovir, a biologically compatible small molecule with minimal toxicity. Our modular approach involves a scaffold comprising a central F30 three-way junction, an integrated acyclovir aptamer on the input arm, and a variable effector-binding aptamer on the output arm. This design allows for the rapid engineering of acyclovir-regulated RNs, facilitating temporal, tunable, and reversible control of intracellular aptamers. We demonstrate the control of the Broccoli aptamer and the iron-responsive element (IRE) by acyclovir. Regulating the IRE with acyclovir enables precise control over iron-regulatory protein (IRP) sequestration, consequently promoting the inhibition of ferroptosis. Overall, the method described here provides a platform for transforming aptamers into acyclovir-controllable antagonists against physiologic target proteins.

Indexed as

AcyclovirAptamers, NucleotideRNAAntiviral AgentsHumansNanostructuresAcyclovirAntiviral AgentsAptamers, NucleotideRNAacyclovircircular RNAdrug-regulated aptamersferroptosisiron-regulatory proteiniron-responisve elementRNA nanodevicesRNA three-way junction

Identifiers

PMID39191249
PMCPMC11680490

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.