Evidence map›Paper›PMID 39190685›Full record

ArticleBiochemistry2024

A Newly Identified Peripheral Duplex Anchors and Stabilizes the MALAT1 Triplex.

Mary N Mwangi, Michael J Yonkunas, Abeer A Ageeli, Kayleigh R McGovern-Gooch, Sevde Yilmaz, Nathan J Baird

Abstract read
In one paragraph

Article in Biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. RNA Triple Helices: From Structures and Mechanisms to Therapeutic Targets.International journal of biological sciences · 2026
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mary N MwangiDepartment of Chemistry & Biochemistry, Saint Joseph's University, 600 S. 43rd Street, Philadelphia, Pennsylvania 19104, United States.ORCID 0009-0000-1855-5213
Michael J YonkunasDepartment of Chemistry & Biochemistry, Saint Joseph's University, 600 S. 43rd Street, Philadelphia, Pennsylvania 19104, United States.
Abeer A AgeeliDepartment of Chemistry & Biochemistry, Saint Joseph's University, 600 S. 43rd Street, Philadelphia, Pennsylvania 19104, United States.
Kayleigh R McGovern-GoochDepartment of Chemistry & Biochemistry, Saint Joseph's University, 600 S. 43rd Street, Philadelphia, Pennsylvania 19104, United States.
Sevde YilmazDepartment of Chemistry & Biochemistry, Saint Joseph's University, 600 S. 43rd Street, Philadelphia, Pennsylvania 19104, United States.
Nathan J BairdDepartment of Chemistry & Biochemistry, Saint Joseph's University, 600 S. 43rd Street, Philadelphia, Pennsylvania 19104, United States.ORCID 0000-0003-0537-2594

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
NCI NIH HHS 75N91019D00024
6 · The paper itself

Abstract

The accumulation of the 8-kb oncogenic long noncoding MALAT1 RNA in cells is dependent on the presence of a protective triple helix structure at the 3' terminus. While recent studies have examined the functional importance of numerous base triples within the triplex and its immediately adjacent base pairs, the functional importance of peripheral duplex elements has not been thoroughly investigated. To investigate the functional importance of a peripheral linker region that was previously described as unstructured, we employed a variety of assays including thermal melting, protection from exonucleolytic degradation by RNase R, small-angle X-ray scattering, biochemical ligation and binding assays, and computational modeling. Our results demonstrate the presence of a duplex within this linker that enhances the functional stability of the triplex

Indexed as

Nucleic Acid ConformationRNA, Long NoncodingRNA StabilityHumansModels, MolecularScattering, Small AngleMALAT1 long non-coding RNA, humanRNA, Long Noncoding

Identifiers

PMID39190685
PMCPMC11411715

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.